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Report for CCDS36926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36926.1 Public Mus musculus 14 Il25 23 108 98 CCDS HistoryNCBI Gene:140806Re-query CCDS DB by CCDS ID:36926.1Re-query CCDS DB by GeneID:140806See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037863.5 ENSMUSP00000039641.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037863.5Link to Ensembl Protein Viewer:ENSMUSP00000039641.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037863Re-query CCDS DB by Protein ID:ENSMUSP00000039641
Original member Current member NCBI NM_080729.3 NP_542767.1 Accepted alive Link to Nucleotide Sequence:NM_080729.3Link to Protein Sequence:NP_542767.1Re-query CCDS DB by Nucleotide ID:NM_080729Re-query CCDS DB by Protein ID:NP_542767Link to BLAST:NP_542767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542767.1 169 Q8VHH8 169 100% 0 0

Chromosomal Locations for CCDS 36926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54932771 54932779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54932981 54933225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54935104 54935359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGTACCAGGCTGTTGCATTCTTGGCAATGATCGTGGGAACCCACACCGTCAGCTTGCGGATCCAGGAGG
GCTGCAGTCACTTGCCCAGCTGCTGCCCCAGCAAAGAGCAAGAACCCCCGGAGGAGTGGCTGAAGTGGAG
CTCTGCATCTGTGTCCCCCCCAGAGCCTCTGAGCCACACCCACCACGCAGAATCCTGCAGGGCCAGCAAG
GATGGCCCCCTCAACAGCAGGGCCATCTCTCCTTGGAGCTATGAGTTGGACAGGGACTTGAATCGGGTCC
CCCAGGACCTGTACCACGCTCGATGCCTGTGCCCACACTGCGTCAGCCTACAGACAGGCTCCCACATGGA
CCCGCTGGGCAACTCCGTCCCACTTTACCACAACCAGACGGTCTTCTACCGGCGGCCATGCCATGGCGAG
GAAGGTACCCATCGCCGCTACTGCTTGGAGCGCAGGCTCTACCGAGTCTCCTTGGCTTGTGTGTGTGTGC
GGCCCCGGGTCATGGCTTAG

Translation (169 aa):
MYQAVAFLAMIVGTHTVSLRIQEGCSHLPSCCPSKEQEPPEEWLKWSSASVSPPEPLSHTHHAESCRASK
DGPLNSRAISPWSYELDRDLNRVPQDLYHARCLCPHCVSLQTGSHMDPLGNSVPLYHNQTVFYRRPCHGE
EGTHRRYCLERRLYRVSLACVCVRPRVMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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