NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49083.1 Public Mus musculus 12 Dact1 23 108 98 CCDS HistoryNCBI Gene:59036Re-query CCDS DB by CCDS ID:49083.1Re-query CCDS DB by GeneID:59036See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150639.1 ENSMUSP00000117169.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150639.1Link to Ensembl Protein Viewer:ENSMUSP00000117169.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150639Re-query CCDS DB by Protein ID:ENSMUSP00000117169
Original member Current member NCBI NM_001190466.1 NP_001177395.1 Accepted alive Link to Nucleotide Sequence:NM_001190466.1Link to Protein Sequence:NP_001177395.1Re-query CCDS DB by Nucleotide ID:NM_001190466Re-query CCDS DB by Protein ID:NP_001177395Link to BLAST:NP_001177395.1

Chromosomal Locations for CCDS 49083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71309984 71310307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71312686 71312818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71313785 71313940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71317060 71318894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGAAGCCGGACGCAGCGCGCGAGCCGGAGCCGCTGAGCCCCGGCCGGGGCGCGGAGGCCGAGGGGCGCT
GGCGCGAGAGGGGCGAGGCGGACACGGAGCGGCAGCGTACCCGCGAGCGCCAGGAGGCCACGCTGGCGGG
GCTGGCGGAGCTGGGGTACCTGCGGCAACGCCAAGAGCTGCTGGTGCGCGGTGCGCTGCGCTGCTCCGGG
ACCGTGGGGACCGTCGCGCCGCGCTCCGGGGAGCTGCGGGGAGACGCGGCGCAGCGCAGCCGCCTGGAGG
AGAAGTTCCTGGAAGAGAACATCTTGCTGCTGCGAAGGCAGTTGAATTGTTTGAGGAGAAGAGATGCCGG
TTTGTTGAATCAGTTGCAAGAACTTGACAAGCAGATAAGTGACCTGAGACTGGATGTGGAGAAGACATCT
GAAGAGCACCTGGAGACAGACAGCCGGCCTAGCTCAGGGTTTTATGAGCTGAGTGATGGAGCTTCGGGCT
CCCTCTCTAACTCCTCCAACTCCGTGTTCAGTGAGTGTTTGTCCAGTTGCCATTCCAGCACCTGCTTCTG
CAGCCCCTTGGAGGCGGCCTTGACCATCTCAGACGGTTGCCCCAAATCTGCAGATCTCATAGGATGGTTG
GAATGTAAAGGCGGCCCCTGTGAAGACCAGGCCTCAGGGACAGTGTGCAGTTCCCCCTCCACACCACAAT
TTAATTCCCTTGATGTCATTGCAGATGTGAATCCTAAATACCAGTGTGATCTTGTGTCTAAAAACGGGAA
TGACGTATATCGCTACCCCAGTCCACTTCATGCTGTGGCTGTGCAGAGCCCAATGTTTCTCCTTTGTCTG
ACGGGCAACACTCTGAGGGAAGAGGAGGGGCTTGGGAGCCATGCCAGCGACATCTGCATTGGATCTGAAC
TGAACGCCACCAAAACAGACAATTCCCTGCCATCTCCAAGCAGTTTGTGGTCCGCTTCCCATCCTGCATC
CAGTAAGAAAATGGATGGGTATATTTTGAGCCTCGTGCAGAAGAAAACACACCCTGTAAGGACCAATAAA
CCTAGAACCAGTGTGAACGCTGACCCTACCAAGGGCCTTCTGAGGAATGGAAGTGTGTGTGTCAGGGCCC
CTAGTGGCGTCCCACCGGGCAGTAGTGTGAACTTTAAGAATACAAAACAGATGTGTTTGCCCGCTGGGGG
AATAACCTCTTTGGAAAACGGGCCATTCTCCCCTCCTAAGCAGAGGTCCAAAGACTCAAAGACAGACCAG
TTAGAAAGCAAGAGGTTGGCTCTGCCGGAGAGCTGCTCGGCAGGCGCCGCCATGGAACCCCAAAGCAAGC
ATGTGCCCAAAGCCGCCAAGGCAGCCTCTCAAGAGCTCACAAGGTGTCAAGCCGGGCTGGGGGAATCCAT
GAAGGAAAGCAATCAGGCCTCCGCTGTTTCTCCTAAAACAAGTCCTGGCAGAGGCCCTGTCGCCCCCGCA
GAGAGCAAAGCCCTGCAGCTCCCGAAAAAGATGTCGCAGAAGAACAGCCTCCAGGCTGTGCCCGCGCTGG
ACAGGCCGGCCTTGGACTTCAAAAGCGAGGGCTCATCTCAAAGCCTCGAGGAAGGGCATCTGGTGAAAGC
TCAGTTCATTCCGGGGCAGCAGGCGGCCGCCAGGCCTCACCGTGCACACAGGAACCCGGGTGTCGCAAGG
AGCGCCACCTTGAAGGCCCGCGGCCAGGCAGCCATGGAACACGGCCTGCCCACCGTCAGGGAGAAACCGC
GGGCAGCAGGCAAGAAGTGCCGTTTCCCAGACGACTCGGATACAAATAAGAAATTCAGGAAGACCTCCGC
CAAGGGCCGGCGCAGTGGCGGGCTGCAGGACGCTGGCCTTCCCGGTAGGGCCCTGGGCACCGGCGGCCAT
CGGGCGGGTAGCAGGGCGCACGCGCATGGCCGGGAGCCCGTGGTGGCCAAACCGAAGCACAAGCGAACCG
ACTACCGGCGGTGGAAATCGTCAGCCGAGGTCTCCTACGAAGAAGCCCTGCGGAGGGCCCGGAGGGCTCG
CAGGGAGCACGGGGCTGCCTACCGGGTGGCTGTCGCCCTGCCTTACGCCAGCCCCTATGCCTACGTGCCC
AGCGACTCCGAGTACTCGGCGGAGTGCGAGTCGCTCTTCCACTCCACGGTGGTGGACACCAGCGAGGACG
AGCAGAGCAACTACACCACCAACTGCTTCGGCGACAGCGAGTCCAGCGTGAGCGAAGGCGACTTCGTGGG
CGAGAGCACCACCACCAGCGACTCAGAGGAGAGCGGGGGTTTAATCTGGTCCCAGTTTGTCCAGACTCTC
CCGATTCAAACGGTCACGGCCCCAGACCTCCACACCCGTCCCACAAAAACCTTTGTCAAAATCAAGGCTT
CGCACAACCTCAAGAAGAAGATCCTCCGTTTCCGCTCTGGCTCTTTGAAACTGATGACTACCGTTTGA

Translation (815 aa):
MKPDAAREPEPLSPGRGAEAEGRWRERGEADTERQRTRERQEATLAGLAELGYLRQRQELLVRGALRCSG
TVGTVAPRSGELRGDAAQRSRLEEKFLEENILLLRRQLNCLRRRDAGLLNQLQELDKQISDLRLDVEKTS
EEHLETDSRPSSGFYELSDGASGSLSNSSNSVFSECLSSCHSSTCFCSPLEAALTISDGCPKSADLIGWL
ECKGGPCEDQASGTVCSSPSTPQFNSLDVIADVNPKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFLLCL
TGNTLREEEGLGSHASDICIGSELNATKTDNSLPSPSSLWSASHPASSKKMDGYILSLVQKKTHPVRTNK
PRTSVNADPTKGLLRNGSVCVRAPSGVPPGSSVNFKNTKQMCLPAGGITSLENGPFSPPKQRSKDSKTDQ
LESKRLALPESCSAGAAMEPQSKHVPKAAKAASQELTRCQAGLGESMKESNQASAVSPKTSPGRGPVAPA
ESKALQLPKKMSQKNSLQAVPALDRPALDFKSEGSSQSLEEGHLVKAQFIPGQQAAARPHRAHRNPGVAR
SATLKARGQAAMEHGLPTVREKPRAAGKKCRFPDDSDTNKKFRKTSAKGRRSGGLQDAGLPGRALGTGGH
RAGSRAHAHGREPVVAKPKHKRTDYRRWKSSAEVSYEEALRRARRARREHGAAYRVAVALPYASPYAYVP
SDSEYSAECESLFHSTVVDTSEDEQSNYTTNCFGDSESSVSEGDFVGESTTTSDSEESGGLIWSQFVQTL
PIQTVTAPDLHTRPTKTFVKIKASHNLKKKILRFRSGSLKLMTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH