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Report for CCDS38155.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38155.2 Public Mus musculus 2 Ccdc141 23 108 98 CCDS HistoryNCBI Gene:545428Re-query CCDS DB by CCDS ID:38155.2Re-query CCDS DB by GeneID:545428See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 38155.1
The coding region has been updated to represent an alternate splice pattern to extend the 3' CDS. There is no full-length support in any species, but models in many species are consistent with the long protein (e.g. human NP_775919.3). The update results in a different and substantially longer C-terminus, and also adds an internal exon. The last intron which lacks Mus musculus support completes an Ig domain.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38155.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164114.8 ENSMUSP00000128736.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164114.8Link to Ensembl Protein Viewer:ENSMUSP00000128736.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164114Re-query CCDS DB by Protein ID:ENSMUSP00000128736
Original member Current member NCBI NM_001025576.3 NP_001020747.2 Accepted alive Link to Nucleotide Sequence:NM_001025576.3Link to Protein Sequence:NP_001020747.2Re-query CCDS DB by Nucleotide ID:NM_001025576Re-query CCDS DB by Protein ID:NP_001020747Link to BLAST:NP_001020747.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020747.2 1531 E9Q8Q6-1 1531 100% 0 0

Chromosomal Locations for CCDS 38155.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77011490 77011757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77014394 77015247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77019913 77020029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77023446 77023558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77027592 77027775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77029236 77029430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77030567 77030707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77039436 77039585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77041365 77041544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77042443 77042631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77044660 77044785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77045606 77045785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77049579 77049758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77054577 77054768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77057893 77058012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77059540 77059681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77074836 77075008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77089070 77089264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77108363 77108479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77124122 77124375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77128229 77128337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77132182 77132373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77168511 77168633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77170385 77170486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4596 nt):
ATGTCCTGCAAAGAAAGTCCCCATGTGGGTGCTTCCACCACCACTGTCAGCTCTGTAGCCGTGCACGCTG
GGGACTCCAAGATCGTGATCGCCGTTGTCAAGTGTGGCAAATGGGTACGACTCCAACTGGCTGAATCGCA
GCCCAATCTCCTCGAAATTGGGAGCAGTCAAGATGAAACCAAAAAACTCCTTCACGATCATGAGCTGCTT
CTGGCCAAGCTTAAGGCCTTGGAAGATCGTGTGTGGGAACTCTTACGGGAAGCAGACCGGACAGCTGAAG
CAAACAAGGCTCAAAGTCAGGTGTATGACGCCATGGCCCAGACGCTGGGTGAGGCATGGGCAACCCTGGT
CTCCATGCTTGAAAGAAGAAGGGAGCTCCTTGGGCTGACGTCCGAGTTCTTTCAAAGTGCTTTGGAGTTT
GCTATAAAAATAGACCAAGCTGAAGCTTTTCTGCAGAATCCTCATGAGTTTGAGAGCACTGAAGCCTTAC
AGTCACTTCTTCTGCTTCATGACCGACATGCCAAAGAACTCTTAGAAAGATCCCTAGACCTTTTAAACAA
AAGTCAACAACTGACTGACTTCATAGAAAAATTCAAGTGTGAAGGATCTACTATGAATTCTGAGCTGATC
CAGGGAGCTCAGAGCAGCTGTCTGAAGATCGACAGCCTCCTTGAACTTCTGCAAGACAGGAGAAGGCAGC
TCGACAAGTACTTGCAGCAACAGCGGCAGGAATTGTCTCAGGTTCTGCAGTTGTGTCTGTGGGACCAACA
AGAAAACCAGGTTTCTTCTTGGTTTCAGAAAGCAATAAGAGATCTGCAGGAACAGAGTCTGGGCGCATCA
CTTTCAGACAACAGAGAGCTAATCTGCAAGCACGAGGACCTGATAGTCAAAGCAAAGGAATGGGATTCGG
CCGTAGAGAAGCTGAAAAGCCAGGCTTTGGGGATTCTATTGTCCAAGGACTTGGCAGGAAAGGAACATCT
ACAGCTCTCTAACCAGAAACTGAATCGGCTTCAAGAAGAATTTGGAAGACTCATGGTGGAAAGGAAAGCC
TGGTTATCGATGGCAAATGACTTTTTTACCAGTGCTAACAAGTCATTTGATGTACTTGGGAAAGTTGAAG
CTTACCTTAAGCTCCTTAAATCAGAGGGTTTAAGCCTGCCTGTCTTGGCAGCGAAGCATGAGGAATTACA
CAGAGAAATTAAAGACTCTACAGCCACTGCTCTGCAAAAGGGACGAACCTTAATCAGCCAAGTAGACTCC
TGCCGCTCTCGGGTGACAGGAATCCACGAGATGATGGGATACATTCAGAACCGAGTGGATTGTCTCACTG
AACAGTGTACAGCGCATGAGGAATTTGCCCGCAAGAGACAGCAATTAGCAACATCAGTGGACGACTACCT
AAGGAAGGTGGAAATGTCAATTCAGGAAATCAGGCCCATTCTTGCTACCACATTGGATGTTGCTTCCAGC
CCTTCTGAATCAGAGAAGATTTTAAATAAATATCTGGAATTGGATATCCAAGTCAAGGAGACAGCACATG
CATTAGAAGCAGCTGCAAAAATCATGACAGAGAAAAATGAACTTGAACTCAATGAAGTGGCATTGCTTCC
TCTTAAAGTGAAATGGCTAGAGGAAGAATTAAGCACGCTTGGTCGAAGCATCAGCTGCAGGTCACGGATC
CTGCAGACGTACGTGGCATTTCGAAAGTCATCCGAGGAGGCAGAGGAGCAGCTTCAGAGCCTAAAGGAAT
TTTATCTGACTGAAATTCCTTGGAAAGATGAAGACGATGCTGTGGTCAAGTGCCAGTCTAACTCCGCTGA
GAGGAAATGGCAGCTGTTTTTAAAGAAGAGTTTTTTGACCCAGGACTTGAGCCTCGAGTTTCTGAACTTA
ATAAACATGGCAAAAGAGAATGAGATATTAAATGTTAAAAATGAAATGCACATTATGGAGAACATTATGG
AAAAGCAAACAAATGGAAGGGAAGAGCTCAGCCATCTCCGAGTGGCGTGGTACCTCAAAGCTATCGAAGG
CAAGCCTGCGAGAGAGCAGTGGGAAATGTTCAAAGAGAAACTTACAAAGACTACTCACAGTGTAAAACTT
CTCCACGAAGTTCTCATGCCTGTCTCTGCGCTTGACCTTGGGGGGAGCCTCCAGAGCACGTCAGATCTGC
GGAGGAGGTGGATCGCAATGAAGCCTCAGCTCCAGCAACTGCATGAGGATGTTCAGCAAATCACGAAAGA
GTGGGAAGTGTTAAGCAGTCAGGGAGCTCCTCTGAAGGAGAAGGCTGAACAGCTGAAGGACCTTGTCCAT
CTCCACCGGAGGCAGCGAGAGCGAATCCAGGAATATGAGGAAATCCTATACAAGACAGTCCAGTTCCACC
AGGTCAAGGAAGAGCTGGTCCATCTCATCAAACCAAGAGAACTGGAACTTCTAGCACAGCCCATGGAACT
GGCAAGTTCTGAGGAGGTCCAGATGCAACTGGGCCGTTCGCAAGAAAGGCGGGCACATGTAGACCATCTC
CATCAGCTGGCCCTGACCTTAGGAGTGGACATCATTTCATCCGTGCAACAACCTAATTGCTCTAATATTT
CTGCAAAGAACCTGCAGCAGCAGCTGGAGGCCCTTGAACTGGAGAGCAGGAGTTGGAGTGCCCAAGCCAA
AGAACATGAGCGCGTCCTGTCCTGCAGCTTGGAGTACTGCACTGCACGTGATGAGATCAGTGAGCTCAAA
GAGTCATTCAAAGACATAAAAAAGAAATTCAACAATCTGAAGTTTAATTACTCCAAGAAAAATGAGAAAT
CTCGAAATTTAAAGACTCTTCAGTATCAAATCCAACAAGTGGATACATATGCTGAAAAAATTCAGGCTCT
AAGGAAGAAAATGGAAAAAGTTAATAATAAGACATCTGATTCATTCTTAAGTTATCCAAGTAATAAAGCT
AACATGCTTTCGGAAGCCATGGAGGATTTGAAAAAGAACGTGGATGACTTTGACAAAGTTGTGACAGATT
ACAAAATGAATTTGGACCTGACTGAGCATCTTCAGGAAGTAATAGAAGAGTGTAACTTTTGGTATGAAGA
TGCAAGTGCCACCGTTGTGAGAGTTGGGAAGTATTCCATGGAGTGCCAAACAAGGGAAGCTGTGGACATC
CTCCACAGGCAGTTCAATAAGTTTATTACTCCCTCGGTGCCCCAGCAAGAAGAAAGGATTCAGGAGGTCA
TTGACCTTGCTCAGCGCTTATATGGTTTGGAAGAGGGGCAGAAATATGCAGAGAAGATTGTCACAAGACA
CAAGGAGATTCTTGAATCTATTACTGAATTATGTGGGTCTCTCGTGGAACTTAAAGAAAAACTGATGCAG
GGAGAGGTTCCAAAGATGAATTCAGATTTGGAAGATTTCCATGACAATTGCATTGATCTGCTAAAGGGGC
CAGGGAAGGATGACCAGAAAACATTCAGTGAAGAAAGGAATGAGGGGCAGGTGCAGGGAGCAGATGTATT
GGCCGTCAATGGAACAAGAGAAGATGGGCTTCCCATGGACTTGAGGCGGACCTCCTCTGACAAAGAGGAC
AGCGCCCAGGGTCTGATCCTTCCAGAAGACACACTATCTGGAGAAGAATCTGAGTGTATCTCATCCGATG
ACATCTCTTTGCCTCCACTGCCAGTGAGCCCCGAGTCCCCTCTGGCACCATCAGACATGGAGGTAGAAGA
ACTTACCAGCTCCTCTGCCCTCGCCCTGCACATCAGCGGCTACAGGATGCATCCAGGGACAGGTGGTCTA
GGAAAGGCCCAGGAGTCTGCTCTTCCCTCACCCATTGCCTTTGCGGATGGGGGCCATAGTAAGAAAGACA
CATTTACAAGTCATTTTGAGAGGCCCTATCCACAGTTGAAAGCTGAATCCTCATTAGCCTCCAGAGGATC
AGCAGAGATGAGTACCAAGTTGCACATCAATGTGAAATGTCCAGCGAGCATGCCCCATGAAGTGCACGAC
AAAGCTTTACAGCAATGCTCCCAGGCTCGGGAGAGCACACTAGAAATGCAGGAAAAAGTGCATGCTGATT
CTAACGTCACTAAAACCCAAGACAGGCTGCATGCTGCCCTTGATGTGTCCCCTGGCCTCGGCTCTCAACC
AGACACCAGCGAGAGCCATCAGAGGCGAGTGGGTCCCCAAGGAAACAAGAAAAACTCATCCGCAGAAAAC
AGCGTGGTCAGCCTAGCTGGCCAGGCACCTCATTTCTCCAGGCTGCTGTCCAATGTAACTGTCATGGAAG
GTTCCCCAGTGACTTTGGAAGTCGAAGTAACAGGATTCCCAGAGCCTACACTGACATGGTTCAAGAAGGG
CCAGAAACTGTGTGCAGATGGACACTTACAGGTCTTGCACAAGGACACAAAGCATTCGGTGTTCATTCCG
AAGGTATGTGAGGCAGATGCTGGCCTCTATGTGGCTCAAGCCCAAAACTCTAGTGGCACCCTGTCTTCCA
AAGCCATCCTCCATGTGACAGGTAACCATGGGCCACCAATTACAAGACTAAACTGGATTATGCTGTGTAT
CATCTATGTCAGTGTATCAGTAATATACTGGCTACTTACACGATAG

Translation (1531 aa):
MSCKESPHVGASTTTVSSVAVHAGDSKIVIAVVKCGKWVRLQLAESQPNLLEIGSSQDETKKLLHDHELL
LAKLKALEDRVWELLREADRTAEANKAQSQVYDAMAQTLGEAWATLVSMLERRRELLGLTSEFFQSALEF
AIKIDQAEAFLQNPHEFESTEALQSLLLLHDRHAKELLERSLDLLNKSQQLTDFIEKFKCEGSTMNSELI
QGAQSSCLKIDSLLELLQDRRRQLDKYLQQQRQELSQVLQLCLWDQQENQVSSWFQKAIRDLQEQSLGAS
LSDNRELICKHEDLIVKAKEWDSAVEKLKSQALGILLSKDLAGKEHLQLSNQKLNRLQEEFGRLMVERKA
WLSMANDFFTSANKSFDVLGKVEAYLKLLKSEGLSLPVLAAKHEELHREIKDSTATALQKGRTLISQVDS
CRSRVTGIHEMMGYIQNRVDCLTEQCTAHEEFARKRQQLATSVDDYLRKVEMSIQEIRPILATTLDVASS
PSESEKILNKYLELDIQVKETAHALEAAAKIMTEKNELELNEVALLPLKVKWLEEELSTLGRSISCRSRI
LQTYVAFRKSSEEAEEQLQSLKEFYLTEIPWKDEDDAVVKCQSNSAERKWQLFLKKSFLTQDLSLEFLNL
INMAKENEILNVKNEMHIMENIMEKQTNGREELSHLRVAWYLKAIEGKPAREQWEMFKEKLTKTTHSVKL
LHEVLMPVSALDLGGSLQSTSDLRRRWIAMKPQLQQLHEDVQQITKEWEVLSSQGAPLKEKAEQLKDLVH
LHRRQRERIQEYEEILYKTVQFHQVKEELVHLIKPRELELLAQPMELASSEEVQMQLGRSQERRAHVDHL
HQLALTLGVDIISSVQQPNCSNISAKNLQQQLEALELESRSWSAQAKEHERVLSCSLEYCTARDEISELK
ESFKDIKKKFNNLKFNYSKKNEKSRNLKTLQYQIQQVDTYAEKIQALRKKMEKVNNKTSDSFLSYPSNKA
NMLSEAMEDLKKNVDDFDKVVTDYKMNLDLTEHLQEVIEECNFWYEDASATVVRVGKYSMECQTREAVDI
LHRQFNKFITPSVPQQEERIQEVIDLAQRLYGLEEGQKYAEKIVTRHKEILESITELCGSLVELKEKLMQ
GEVPKMNSDLEDFHDNCIDLLKGPGKDDQKTFSEERNEGQVQGADVLAVNGTREDGLPMDLRRTSSDKED
SAQGLILPEDTLSGEESECISSDDISLPPLPVSPESPLAPSDMEVEELTSSSALALHISGYRMHPGTGGL
GKAQESALPSPIAFADGGHSKKDTFTSHFERPYPQLKAESSLASRGSAEMSTKLHINVKCPASMPHEVHD
KALQQCSQARESTLEMQEKVHADSNVTKTQDRLHAALDVSPGLGSQPDTSESHQRRVGPQGNKKNSSAEN
SVVSLAGQAPHFSRLLSNVTVMEGSPVTLEVEVTGFPEPTLTWFKKGQKLCADGHLQVLHKDTKHSVFIP
KVCEADAGLYVAQAQNSSGTLSSKAILHVTGNHGPPITRLNWIMLCIIYVSVSVIYWLLTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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