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Report for CCDS27149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27149.1 Public Mus musculus 14 Rnf17 23 108 98 CCDS HistoryNCBI Gene:30054Re-query CCDS DB by CCDS ID:27149.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27149.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095793.2 ENSMUSP00000093469.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095793.2Link to Ensembl Protein Viewer:ENSMUSP00000093469.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095793Re-query CCDS DB by Protein ID:ENSMUSP00000093469
Original member Current member NCBI NM_001033043.1 NP_001028215.1 Accepted alive Link to Nucleotide Sequence:NM_001033043.1Link to Protein Sequence:NP_001028215.1Re-query CCDS DB by Nucleotide ID:NM_001033043Re-query CCDS DB by Protein ID:NP_001028215Link to BLAST:NP_001028215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028215.1 1640 Q99MV7-1 1640 100% 0 0

Chromosomal Locations for CCDS 27149.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56402701 56402824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56405577 56405671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56421075 56421166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56424458 56424569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56425600 56425671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56427888 56427988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56431478 56431649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56434321 56434397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56434597 56434671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56438604 56438908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56441531 56441620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56459966 56460124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56461881 56462070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56463024 56463192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56465627 56465817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56467665 56467806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56471291 56471444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56475398 56475513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56477589 56477706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56480692 56480809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56481967 56482194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56483074 56483224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56483364 56483482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56485154 56485244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56486962 56487077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56493118 56493404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56500428 56500591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56503918 56504037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56505927 56506007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56507818 56507943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56509279 56509335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56512211 56512327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56514036 56514204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56516336 56516471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56522374 56522563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56524306 56524404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4923 nt):
ATGGCGGCAGAGGCTTCGTCGACCGGGCTGGCTTCCTGTCACCTAGTGGAGAGTAAGAGTGGAGCGCAGG
GTGCTTCGGGGTGTCAGTGCACTCGGTGTGGAAGGAAGGTGTCCGTTGCCTCCGGTGACCACCACAAGTT
TCCATGTGGACATGCCTTTTGTGAACTGTGCCTGTTAGCACCTCAAGAATATACCACAAGTAAATGCACT
GACTGTGAGGTTCATACAACTGTCAGCATGAATCAAGGTCACTACCCAGTAGATGGCTTCATCGAGGAAG
ATTCTTCTCTGGAAGCCTTGCCACCGAAAATGGTAAATAACTGCTCTTCAGATCTTGAAAAGACAGTGGA
CCAGCTAATTAATGATTTAGAACATTCATCCTCCATACATAGGAATGTTTCAAACCCATCAGCTGTAATG
TCGGAGACAGAAGAAATTGATGAAGCACTGAAGATAGCAGGCTGTAATTTTGAACAATTAAGTAATGCTA
TAAAAATGCTTGATAGCACACAAGATCAAACAAGACAAGAGACACACAGTCTAACAGAGGCTGTGGAGAA
ACAGTTTGATACACTTCTTGCTTCTCTTGATTCCAGGAAAAAGAGCTTGTGTGAAGAACTTATAAGGCGT
ACAGATGATTATTTATCAAAATTAGTAACAGTTAAAAGCTACATTGAAGAGAAAAAAAGTGATTTGGATG
CAGCTATGAAGATAGCAAAAGAACTCAGATCTGCTCCTTCTCTGAGGACCTACTGTGACCTGACTCAGAT
TATCCGGACTTTGAAGTTAACATTTGAAAGTGAATTGTCACAAGTTAGTTCCATAATTCCAAGGAACACC
CCTAGGTTGGATATAAATTGCAGTGAGGCCATCTGCATGTTCAGCAGTATGGGAAAGATTGAATTTGAGG
ACTCAACAAAATGTTACCCTCAAGAAAATGAAGATGGACAGAATGTTCAAAAGAAATTTAATAATAGAAA
GGAACTCTGTTGTGATGTATACTCATCACTAGAAAAGAAAAAGGTAGATGCTGCTGTCCTGACTGATGAA
ACACCTGAACCTCCTTTGCAAGCAGAGGCCCCTGACAGGCATTTAGAAGGGAAAAAGAAGCAGCCAACAA
AAGAGATGGTTGTGGTGACATCTCCTAAGACTATTGCTGTACTGCCTCAACTGGGATCCAGCCCTGATGT
GATAATTGAGGAAATTATTGAGGAAAACCTAGAATCATGCTTTACAGATGATCCTATAGAGACTTCTGGA
TACCCAAAAAAGCCCCCTCAGAAAGAGCAGTCTGCTCCTGTTGGATCAAAAGCAGGTTGTCCAGAGCTAG
TTTTTGTAAGTCATGTAATACATCCTTGCCACTTCTATGTGCGGAAATATTCACAAATAAAAGATGCAAC
AATATTGGAGAAGAAGATGAAGCAAGTTTGCAATAGGAGCTTACACCTTGATCCTTCAGACATTTTGGAA
CTAGGTGCAAGAATATTTGTCAACAGTATTAAGAATAGAATGTGGTGTCGAGGAATTATCACTGAAATAA
TTCCATCAAAAACTAAAAATATTAGAAAACCATGTAGTCCAACCAAATTCTCAGTCTGTGAAATTTCACT
AATACAGATATTCATGGTAGATTTTGGAAATTCTGAAGTCCTGATCATCACAGGAGTTGGTGACACACAT
GAGGGACCAGAGCATGATGGTGAACAGCATATTACACTAAGTGACTTCTGTCTGCTTCTAATGAAGTCTG
AACCATACAGTGAGGAACTGTTGAAAGACATCCCACATTTAGCACACCTGTGCTCCTTGAAAGACATCGT
CCCATACAATTCAACTGAGGGCTGGGAAAAGGAGGCAAAAGTGGAATTTTTGAAAATGGTAAATAAGAAG
GCTGTCTTAATGAAAGTTTTTGGAGAAGAAGATGATGTCCTTATTGTAGATCTGCAGAAACCACCAACAA
ATAAAATCAGCAGTGATATGCCTGTGTCTCTCAGAGATGCATTGGTTTTTATGGAACTAGCAAGGTTTAG
GTCACAATCACCAAGAAGTCACAGTGAAAAAAATACAACTTTATGCTATCATCCACCCATTTTGCCTGAA
GAGATGACTGAAGTTTCAGTCATGGTTTGCCATATAAATAGTCCTACTGATTTTTATCTTCAGCTGATGG
AGAACCTGGACTTTTTATCTCTTTTAAAAACAATTGAGGAATTCTATAAAGGTGAAGATGGAGAAAATCT
GGAAATCCTTTGTCCTCTTCAGAATCAAGCCTGTGTAGCTAAATTTGAAGATGGAATCTGGTATCGTGCA
AAAGTGATCGGATTGCCTGGACATCGGGAAGTAGAAGTTAAATATGTGGACTTTGGTAATACTGCAAAAA
TAACACTTAAAGATATGCGGAAAATAAAGGATGAGTTTTTGGAACCCCCAGAGAAGGCAATTAAATGTAA
GCTGGCATATGTTGAACCAAGTAAAAAATCACAGTGGTCCAAAAAGGCTAAAGAGAAATTTGAAGAAAAG
ACTCAAGATAAATTTGTGACATGTTCTGTTATTAAGATTCTGGAAAATAATGTGCTCTTGGTTGAGCTTT
TTGATTCTCGAGCTCCTGGAAAAAGTGCTGTTAGTATTAATGACCAGCTCGTGAAAGAGGGCCTAGCATC
TTATGAAGCAGGATATACCCTCAAAGATAACTCTAAAAAGCATCTTGAAGTATGGGATCCTTCTCCTGAA
GAAATTATTACAAGTGAAATAAACAACTTAAGTCCTTTATCTGTAAAATCTCTACCTAATGAGAATTTCC
AGTCATTGTATAACAAGGAGCTGCCTGTGAACATATGTAATGTAATATCTCCTGAGAAGATTTATGTTCA
GTGGTTATTAACAGAAAACTTACTTAATAGTTTAGAAGAGAAGATGGTAGCAGCGTATGAGCACTCAGAA
TGGAAGCCTGTTAAGTGGGAGTGTGATATGCACTGCGCTGTTAAGGTCCCAGCTAAAAATCAGTGGCGAA
GAGGCCAGATTCTCAGAATGGTTACAGACAAACTGGTAGAGGTCTTGCTTTATGATGTTGGTGTTGAACT
AGTAGTGAATATTCACTGCTTAAGAGAACTTCAAGAAAATCTAAAGACAATGGGAAGATTATCTTTGGAA
TGTTCACTTGTTGATATAAGGCCAACTGGCGGAAGTGACAAGTGGACAGCAACAGCTTGTGACTGTCTGT
CACTGCACCTCACTGGAGCCATAGCAACCATAATCTTACAGGAAAGCAACACAACGTGGCCATTACCTGT
GAAAATTTTCTGCCGAGATGAAAAAGGAGAACGTGTTGATGTTTCTAAATATTTGATTAAAAAAGGTTTG
GCATTGAGAGAGAGAAGAGTTAGTAAATCAAGTAACAGCCATTCACCTGAGAAGTCTCTGGAAATACCCC
TGGAGCAAGGAGATTCAGTAGTTACTAAGTGCTTTAAAATTAACTTTGATACTAACAAGAAAATTGCTGA
TAAAGTCAATGAACACAAAGTACCTGATTCTAAGGGAAAGAAATCAGAAAGCAGAAGCACCGGATGCTAT
AGACCACCAGCTGTTCCTAACACGAGTTCATTTGAGGCAATAGTGACCTGCATTGGTGACGATGGAACTA
TATTTGTAGTGCCTAAATTATCAGAATTTGAGCTCATAAAAATGATGGATGAAATTCAAAGTAATTTAAA
GTGCCTTGGTCTTTTGGAGCCATATTCCTGGAAAAAGGGAGAGCCTTGTGCAGTGAGAGGATCTGATACT
TTGTGGTACCGTGGCAAAGTTATGGAGGTTGTGGGAGGCACCATCAGGGTCCAGTATTTAGATCATGGGT
TCACTGAGAAGATTCCACAATGTCATCTGTATCCTATTTTGCTCTATCCTGATACTCCCCAGTTCTGTAT
TCCCTGTCAGCTCTATCAGACTTTACCGGTTGGGAATACCTGGCAGCCAGATGCCATAGAGCTGCTTCAG
GAGCTGCTTTCAAAGAGAGAGGTGGACATTCACATTATGGAATTGCCCAACAATTCATGGGGGAAGTTGT
CTGTCCATCTCTATTTTGATGGGATGTCACTTTCTCATTTTATGGCCCATCATAAATACTGTATTTTTGA
ACATACCGAGGAGATATTTAAAGAAAAACCAAGAGGTCAGAATAAAAAGTATGAAGATGAAAACTGGAAA
ATAAGATTTGAGGACTTGCTTTTGCCTGAAATGGAGGCTCCCGTTTTACCACCGTATCTGTCTTCCCTTC
TGCCTCCACCAGAGGAGCTGTTTGCCGTGCAAGTGAAGCACATTGTCTCACCGGATGAAATGTATATTTG
CCTTGACTCTGAAGATAGCTATACTCAGTTTAACCATCATGGTGACACGGATGACAGTGGAGTCAGCTGG
GAGTCAGAGTCAGAGAACCTGGAGGAAGCGCTGCAGAGATTTAACAAGAACGTGGAGACGTTTCCTCCCC
TGACGGATTTTAGCTCAGAGATGCCTTGCCTTGCAGAATATGCTGATGGTTTGTGGTATAGAGCAAAGAT
CATTTCCATTAAAGAATTTAACCCTTTATCTGTCCTGGTACTGTTTGTTGATTATGGTTGCACAGAGAAG
TTGACAATAAACAGACTACGTCAGATTCCTGTTCAGCTTATGCAGTACCCAGCCCAAGCCATAAAGGTGC
TCTTGGCAGGGTTTAAACCTCCCTTAAGTGACTCGGGAAAAACAAGAATACCATACTGTCCCAAATGGAG
CATGGAAGCCTTGTGGACTATGATAGACTGTCTCCAAGGAAAACAACTTTATGCTTCTTCTGTGGCTCAG
GCACCAGAACAAATAGTGACATTATATGAAGATGAACAATACCCAGTTCACATGTCCTTGGTAGAAATGG
GGCTTGCAGATAAAGATGAATGA

Translation (1640 aa):
MAAEASSTGLASCHLVESKSGAQGASGCQCTRCGRKVSVASGDHHKFPCGHAFCELCLLAPQEYTTSKCT
DCEVHTTVSMNQGHYPVDGFIEEDSSLEALPPKMVNNCSSDLEKTVDQLINDLEHSSSIHRNVSNPSAVM
SETEEIDEALKIAGCNFEQLSNAIKMLDSTQDQTRQETHSLTEAVEKQFDTLLASLDSRKKSLCEELIRR
TDDYLSKLVTVKSYIEEKKSDLDAAMKIAKELRSAPSLRTYCDLTQIIRTLKLTFESELSQVSSIIPRNT
PRLDINCSEAICMFSSMGKIEFEDSTKCYPQENEDGQNVQKKFNNRKELCCDVYSSLEKKKVDAAVLTDE
TPEPPLQAEAPDRHLEGKKKQPTKEMVVVTSPKTIAVLPQLGSSPDVIIEEIIEENLESCFTDDPIETSG
YPKKPPQKEQSAPVGSKAGCPELVFVSHVIHPCHFYVRKYSQIKDATILEKKMKQVCNRSLHLDPSDILE
LGARIFVNSIKNRMWCRGIITEIIPSKTKNIRKPCSPTKFSVCEISLIQIFMVDFGNSEVLIITGVGDTH
EGPEHDGEQHITLSDFCLLLMKSEPYSEELLKDIPHLAHLCSLKDIVPYNSTEGWEKEAKVEFLKMVNKK
AVLMKVFGEEDDVLIVDLQKPPTNKISSDMPVSLRDALVFMELARFRSQSPRSHSEKNTTLCYHPPILPE
EMTEVSVMVCHINSPTDFYLQLMENLDFLSLLKTIEEFYKGEDGENLEILCPLQNQACVAKFEDGIWYRA
KVIGLPGHREVEVKYVDFGNTAKITLKDMRKIKDEFLEPPEKAIKCKLAYVEPSKKSQWSKKAKEKFEEK
TQDKFVTCSVIKILENNVLLVELFDSRAPGKSAVSINDQLVKEGLASYEAGYTLKDNSKKHLEVWDPSPE
EIITSEINNLSPLSVKSLPNENFQSLYNKELPVNICNVISPEKIYVQWLLTENLLNSLEEKMVAAYEHSE
WKPVKWECDMHCAVKVPAKNQWRRGQILRMVTDKLVEVLLYDVGVELVVNIHCLRELQENLKTMGRLSLE
CSLVDIRPTGGSDKWTATACDCLSLHLTGAIATIILQESNTTWPLPVKIFCRDEKGERVDVSKYLIKKGL
ALRERRVSKSSNSHSPEKSLEIPLEQGDSVVTKCFKINFDTNKKIADKVNEHKVPDSKGKKSESRSTGCY
RPPAVPNTSSFEAIVTCIGDDGTIFVVPKLSEFELIKMMDEIQSNLKCLGLLEPYSWKKGEPCAVRGSDT
LWYRGKVMEVVGGTIRVQYLDHGFTEKIPQCHLYPILLYPDTPQFCIPCQLYQTLPVGNTWQPDAIELLQ
ELLSKREVDIHIMELPNNSWGKLSVHLYFDGMSLSHFMAHHKYCIFEHTEEIFKEKPRGQNKKYEDENWK
IRFEDLLLPEMEAPVLPPYLSSLLPPPEELFAVQVKHIVSPDEMYICLDSEDSYTQFNHHGDTDDSGVSW
ESESENLEEALQRFNKNVETFPPLTDFSSEMPCLAEYADGLWYRAKIISIKEFNPLSVLVLFVDYGCTEK
LTINRLRQIPVQLMQYPAQAIKVLLAGFKPPLSDSGKTRIPYCPKWSMEALWTMIDCLQGKQLYASSVAQ
APEQIVTLYEDEQYPVHMSLVEMGLADKDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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