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Report for CCDS52870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52870.1 Public Mus musculus 9 Ddx43 23 108 98 CCDS HistoryNCBI Gene:100048658Re-query CCDS DB by CCDS ID:52870.1Re-query CCDS DB by GeneID:100048658See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113367.1 ENSMUSP00000108994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113367.1Link to Ensembl Protein Viewer:ENSMUSP00000108994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113367Re-query CCDS DB by Protein ID:ENSMUSP00000108994
Original member Current member NCBI NM_001191044.1 NP_001177973.1 Accepted alive Link to Nucleotide Sequence:NM_001191044.1Link to Protein Sequence:NP_001177973.1Re-query CCDS DB by Nucleotide ID:NM_001191044Re-query CCDS DB by Protein ID:NP_001177973Link to BLAST:NP_001177973.1

Chromosomal Locations for CCDS 52870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 78395880 78396126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78399041 78399096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78400849 78400975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78402350 78402481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78406351 78406432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78411592 78411748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78412193 78412311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78412966 78413076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78413743 78413884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78414224 78414324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78416663 78416750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78418037 78418164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78418333 78418442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78419212 78419350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78420589 78420676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78421698 78421811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGTCTAGGCGGGAACCCGCAGCCAACGCTTCCTCCTCGGGCGTTGCTCCCCGGCGAAGCTCGACCGGGT
CCCGGGGCGCCGACCGGACAGCGACGGAGGAGACGAACCGGAGAGGCCGGGTCGGTAGCAGGGGTGCGGG
CGGCGGCTGGAGAGAGCCCGCCGGGGCCGCCGAGGCTACGGCCGCCGGCCGCCGCGAACCGCCGCTCTGC
TTCGGGGTGAAGAACGATGTGGTGGGCGCGGTGATAGGTCGTGGTGGGTCAAAAATTAGAGAAATCCAAA
ATACAACGAACACTAGGATACAGGTAATAAAAGGAAATCCTGAGGCAGAAATCAAAATTTTTGGTAATAA
AGCCATGCAAACAAAAGCAAAAACAGTGATAGATAATGTTGTTAAAAAACAACAAAATTACATTCCAGGA
CAAAGAGTTGGTATTATTGCATTCCAACCTACCGTTGGAGCAGATACCAGCACAAGTGAGAGTGTAACAG
ACGATCAGCCATTGATAGATTGGGATCAAATTCGAGAAGATGCTTTGAAATGGGAAAAGAAAAAGTGGGC
AGATTTACCTCCAATTAAGAAAAACTTTTACATAGAGTCAGCAACGACAAGCTCAATGTCACAAGTGCAA
ATAGACAACTGGAGGAAAGAAAATTTTAATATAACATGTGATGACTTGAAAGATGGTGAGAAGCGTCCTA
TCCCCAACCCTATATGTAAATTTGAAGATGCCTTTCAAAGTTACCCAGAAGTAATGGAAAACATTAAAAG
AGCAGGCTTTCAAAAACCTACACCGATTCAGTCACAGGCATGGCCAATAGTTCTACAAGGAATAGATCTT
ATTGGAGTAGCACAAACTGGAACAGGGAAGACACTGTCCTATTTAATGCCTGGATTTATTCATCTAGACT
CTCAACCACTAGCTAGAGAACAAAGAAATGGGCCTGGCATGTTAGTTCTTACGCCCACCCGGGAATTAGC
CCTTCAAGTAGAAGCTGAATGTTCTAAATATTCATATGGTGATCTTAAAAGTGTTTGTGTATATGGTGGT
GGTGATAGAGATGGACAAATACAAGATGTTTCAAAAGGTGTAGACATCATTATTGCAACTCCTGGAAGAT
TGAATGACCTACAAATGAATAACTTTGTCAATCTGAAAAGTGTAACCTATTTGGTTTTAGATGAAGCAGA
CAAGATGCTGGACATGGGATTTGAACCCCAGATAATGAAGATTTTGTTAGATGTACGCCCAGACCGGCAG
ACTATTATGACAAGCGCTACTTGGCCATATGCCGTCCGCCGTCTTGCACAATCTTATTTGAAAGAACCAA
TGATTGTCTATGTTGGTACTTTGGATCTAGTTGCTGTAAGTACAGTGAAACAAAATATAATCATTACCAC
AGAAGAAGAGAAACGAACTCATATCCAGACCTTCCTCGAGAATATGTCACCTAAAGACAAAGTCATTGTC
TTTGTCAGCAGAAAAGCCGTTGCTGATCACTTATCAAGTGATCTGATTCTCCGACACATATCAGTGGAGT
CTCTGCACGGCAACAGAGAACAGAGTGACCGAGAGAAAGCGTTAGAGAACTTTAAGACAGGTAAAGTGAG
AATACTTATTGCTACTGACTTGGCATCTCGAGGTCTTGATGTCCATGATATCACTCATGTCTACAATTAT
GATTTTCCACGGAACATTGAAGAATATGTACACAGAGTAGGGCGCACTGGGAGAGCAGGGCGCACTGGAA
TGTCAATTACCCTTATCACAAGAAATGATTGGAGGGTTGCCACTGAATTGATTAATATTCTAGAAAGAGC
AAATCAGAATATCCCAGAGGAACTTGTCTTAATGGCTGAGAGATACAAAGCAAATAAACTAAAAAGAGAG
ATGGAAAAAAAAATGGGAAGACCTCAAGGAAAGCCCCAGAAGTTTTACTAA

Translation (646 aa):
MSRREPAANASSSGVAPRRSSTGSRGADRTATEETNRRGRVGSRGAGGGWREPAGAAEATAAGRREPPLC
FGVKNDVVGAVIGRGGSKIREIQNTTNTRIQVIKGNPEAEIKIFGNKAMQTKAKTVIDNVVKKQQNYIPG
QRVGIIAFQPTVGADTSTSESVTDDQPLIDWDQIREDALKWEKKKWADLPPIKKNFYIESATTSSMSQVQ
IDNWRKENFNITCDDLKDGEKRPIPNPICKFEDAFQSYPEVMENIKRAGFQKPTPIQSQAWPIVLQGIDL
IGVAQTGTGKTLSYLMPGFIHLDSQPLAREQRNGPGMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGG
GDRDGQIQDVSKGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQ
TIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENMSPKDKVIV
FVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIATDLASRGLDVHDITHVYNY
DFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELINILERANQNIPEELVLMAERYKANKLKRE
MEKKMGRPQGKPQKFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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