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Report for CCDS23249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23249.1 Public Mus musculus 9 Tmem202 23 108 98 CCDS HistoryNCBI Gene:73893Re-query CCDS DB by CCDS ID:23249.1Re-query CCDS DB by GeneID:73893See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055345.8 ENSMUSP00000053782.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055345.8Link to Ensembl Protein Viewer:ENSMUSP00000053782.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055345Re-query CCDS DB by Protein ID:ENSMUSP00000053782
Original member NCBI NM_178388.2 NP_848475.1 Updated not alive Link to Nucleotide Sequence:NM_178388.2Link to Protein Sequence:NP_848475.1Re-query CCDS DB by Nucleotide ID:NM_178388Re-query CCDS DB by Protein ID:NP_848475
Current member NCBI NM_178388.3 NP_848475.1 Accepted alive Link to Nucleotide Sequence:NM_178388.3Link to Protein Sequence:NP_848475.1Re-query CCDS DB by Nucleotide ID:NM_178388Re-query CCDS DB by Protein ID:NP_848475Link to BLAST:NP_848475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848475.1 275 Q80W35 275 100% 0 0

Chromosomal Locations for CCDS 23249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59519054 59519274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59519619 59519750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59520089 59520238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59524718 59524964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59525365 59525442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGAGAGAAAGGAACAAACCATGACCTTTTACAGTCCTGAGGTCATCAAAATAAAGGGGGACCTGAGAT
ACCAACGGCCTACCCTTCCTACCAACCAACAATCCGTATCGACCCAGAAGCGACAGCAGTATGTGAATGA
GGCTTGCACCTACATCCGGATGTTCTGTGGTAGCCTCTCTGGCTTTAGTGTCTTGCTACTGGCCTGCACA
TCCCCACTGAACTTGGTGCAGTTCCTGGTGAACAACAATGGCCTTGAACTCAAAGCAGGACTCTGGACCT
TATGCTACCATGAGCTGTGCTGGAGCCACACACCCAAGCCACCCTATTATCTCCAGTACTCCAGAGCCTT
GTTCCTCATCTCCATCCTCTTCATGCTTATCAGCCTTGGCTTGCTCTTGAGCTCTTGCCGCCCTGCAGAA
AGAATGATGTCCGCTGAGTTGGATCTGAAGGTGTCCATGCTCAGCTTCTGCTCAGCTGTCAGCTTGCTCC
TCTGCCTCAACCTGTTTCTGGCGCAGGTTGAATTATACACAAAGAATGCCATGGAGTATGAGTTCCTGTG
GACCTACTATCTTAGTTGGTGCAGTGAGGTCTTATATATCTGTGTTGGGATCATCTCTTTTCTCAACTTC
ATAACTTTCCAATTCCATCCTCCTGATGAGGGTGTCAGCGCGGATCTATGGCAGAAGTCCAGGCTGGGCA
TTGGGCCAGTGCCAAAAACACTGTCTGCTACAGCTGAAAGGTCACGTTCTGAGATGCAGTTTCTAAGTGG
GAGACAGGAAAAACTACAGAATGTGAGAAAGGGAAAACTGGCTACCACAAGACTGTGA

Translation (275 aa):
MERKEQTMTFYSPEVIKIKGDLRYQRPTLPTNQQSVSTQKRQQYVNEACTYIRMFCGSLSGFSVLLLACT
SPLNLVQFLVNNNGLELKAGLWTLCYHELCWSHTPKPPYYLQYSRALFLISILFMLISLGLLLSSCRPAE
RMMSAELDLKVSMLSFCSAVSLLLCLNLFLAQVELYTKNAMEYEFLWTYYLSWCSEVLYICVGIISFLNF
ITFQFHPPDEGVSADLWQKSRLGIGPVPKTLSATAERSRSEMQFLSGRQEKLQNVRKGKLATTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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