CCDS Report for Consensus CDS

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Report for CCDS17890.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
17890.1	Public	Mus musculus	3	Clca2	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17890.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000040465.10	ENSMUSP00000036029.6	Accepted	alive
NCBI	NM_178697.5	NP_848812.1	Updated	not alive
NCBI	NM_178697.6	NP_848812.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_848812.1	942	Q8BG22-1	942	100%	0	0

Chromosomal Locations for CCDS 17890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)

Genome Browser links:

Chromosome	Start	Stop
3	145071280	145071722
3	145072137	145072367
3	145075627	145075797
3	145077869	145078139
3	145081196	145081420
3	145084086	145084192
3	145084929	145085106
3	145086296	145086526
3	145087921	145088148
3	145090701	145090860
3	145092119	145092227
3	145095116	145095266
3	145097758	145097895
3	145098779	145098964

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGACCCACAGGGACAGCACAGGACCTGTCATCGGGCTGAAACTTGTGACCCTTCTGTTCACCCTAAGTC CAGAACTTCTGTTCCTGGGAGCTGGATTGAAGCTGAAAGAGAATGGCTATGATGGATTGCTTGTTGCCAT CAATCCCCGGGTACCCGAGGATCTGAAGCTGATTACAAACATTAAGGAAATGATAACCGAAGCTTCCTTT TACCTGTTCAATGCGACCAAGAGGAGGGTGTTTTTCAGAAATGTACAGATTTTAGTACCTGCCACTTGGA CGGATCATAATTACAGTAGAGTAAGACAAGAATCCTATGACAAGGCAAATGTCATAGTGGCTGAGCAGAG TGAGGAACACGGAGATGATCCCTACACCCTACAGCACAGAGGGTGTGGGCAAGAGGGGAGATACATCCAC TTCACCCCCAGCTTCCTACTCAACGATGAGTTAGCCGCAGGCTATGGTGCGCGAGGCAGAGTGTTTGTCC ACGAGTGGGCCCATCTCCGCTGGGGTGTGTTCGATGAATATAACAACGACAAACCGTTCTACGTGAATGG ACGGAATGAGATTCAAGTCACCAGGTGTTCATCTGACATTACAGGCGTTTTTGTGTGTGAAAAGGGCCTC TGCCCCCATGAAGACTGCATTATTAGCAAGATTTTTAGGGAAGGATGCACATTCCTCTACAACAGCACCC AGAATGCAACTGGATCAATAATGTTCATGCCAAGTTTACCTTCTGTGGTTGAATTCTGTAACGAAAGTAC ACACAACCAAGAAGCTCCAAACCTCCAGAACCAAGTGTGCAGCCTCAGAAGCACTTGGGACGTGATCACA GCCTCCTCCGACCTGAACCATAGCCTCCCCGTGCATGGGGTTGGACTTCCAGCCCCTCCCACGTTCTCCC TCTTGCAGGCTGGTGACCGAGTGGTCTGCTTAGTGATTGATGTGTCCAGGAAGATGGCAGAGGGAGACAG ACTGCTCCGACTTCAACAAGCAGCCGAACTGTACTTGATGCAGGTTGTCGAAGCTCACACTTTCGTGGGC ATTGTCACTTTTGATAGCAAAGGAGAAATCCGAGCCTCGCTGCAGCAAATTTACAGTGACGATGACCGGA AGCTGCTGGTTTCATACCTGCCGACCGCCGTGTCCACTGACGCAGAAACGAACATCTGTGCAGGGGTTAA GAAAGGCTTTGAGGTGGTTGAGGAGCGGAATGGAAGAGCTGACGGCTCTGTCCTGATATTAGTGACCAGT GGAGCAGATGAACACATTGCCAACTGCCTGCTCACCTCGATGAACAGTGGATCCACCATTCACTCCATGG CCCTGGGTTCCTCTGCAGCCAGAAAAGTGGGGGAATTATCACGTCTTACAGGAGGTCTAAAGTTCTTCAT TCCAGATAAATTTACTTCTAATGGAATGACTGAAGCTTTCGTTCGAATCTCTTCTGGAACAGGAGACATT TTCCAGCAAAGCTTACAGGTTGAGAGCGTGTGCGAAACTGTGCAACCCCAGCACCAGCTGGCGGATACTA TGACTGTGGATAGCGCCGTGGGCAATGACACACTTTTTCTAGTCACGTGGCAGACTGGTGGCCCCCCTGA GATTGCATTATTGGATCCTAGCGGAAGAAAATACAACACTGGTGACTTTATCATCAACCTGGCCTTTCGG ACAGCCAGCCTTAAGATTCCAGGGACAGCTAAGCATGGGCACTGGACTTACACGCTGAACAACACCCACC ATTCTCCCCAAGCTCTGAAAGTGACAGTGGCCTCTCGTGCCTCCAGCCTGGCCATGTCCCCAGCCACTCT GGAAGCCTTTGTGGAAAGAGACAGCACCTATTTTCCTCAGCCAGTGATCATTTATGCGAATGTGAGGAAA GGTCTGCATCCCATTCTCAATGCCACCGTGGTGGCGACAGTGGAACCAGAGGCTGGAGATCCCGTTGTAC TGCAACTTTTGGATGGCGGAGCAGGTGCAGATGTTATAAGAAATGATGGGATTTACTCCAGGTATTTTTC CTCCTTTGCTGTAAGTGGTAGCTATAGCCTGACAGTGCATGTCCGTCACTCTCCCAGCACAAGCACACTA GCCCTCCCTGTCCCAGGAAACCATGCTATGTATGTACCAGGTTACATAACAAACGATAATATTCAAATGA ATGCTCCCAAAAACTTGGGCCACAGACCTGTGAAGGAGAGGTGGGGCTTCAGTCGAGTGAGCTCGGGAGG CTCCTTCTCCGTGCTGGGAGTCCCAGACGGCCCCCACCCTGACATGTTTCCACCGTGCAAAATTACTGAC CTGGAAGCCATGAAAGTGGAAGACGACGTCGTCCTCTCTTGGACGGCACCTGGGGAAGACTTCGATCAGG GGCAAACTACAAGCTATGAAATAAGAATGAGCAGAAGCCTATGGAACATTCGGGATGACTTTGACAATGC CATCTTGGTGAATTCGTCAGAGCTAGTTCCTCAGCATGCTGGCACCAGGGAGACATTTACATTCTCACCC AAGCTTGTCACCCATGAACTTGATCATGAACTTGCTGAAGATGCACAAGAACCCTACATAGTGTATGTGG CCCTGAGAGCCATGGATAGAAGCTCCCTCAGGTCAGCTGTGTCAAACATTGCCCTGGTATCAATGTCTCT TCCTCCAAACTCTTCTCCTGTAGTGAGCAGAGATGATCTGATCCTGAAAGGAGTTTTAACAACAGTAGGT TTGATAGCAATCCTTTGCCTTATTATGGTTGTAGCACACTGTATTTTTAACAGGAAAAAGAGACCATCAA GAAAAGAGAATGAGACAAAATTTCTATGA
Translation (942 aa):
MTHRDSTGPVIGLKLVTLLFTLSPELLFLGAGLKLKENGYDGLLVAINPRVPEDLKLITNIKEMITEASF YLFNATKRRVFFRNVQILVPATWTDHNYSRVRQESYDKANVIVAEQSEEHGDDPYTLQHRGCGQEGRYIH FTPSFLLNDELAAGYGARGRVFVHEWAHLRWGVFDEYNNDKPFYVNGRNEIQVTRCSSDITGVFVCEKGL CPHEDCIISKIFREGCTFLYNSTQNATGSIMFMPSLPSVVEFCNESTHNQEAPNLQNQVCSLRSTWDVIT ASSDLNHSLPVHGVGLPAPPTFSLLQAGDRVVCLVIDVSRKMAEGDRLLRLQQAAELYLMQVVEAHTFVG IVTFDSKGEIRASLQQIYSDDDRKLLVSYLPTAVSTDAETNICAGVKKGFEVVEERNGRADGSVLILVTS GADEHIANCLLTSMNSGSTIHSMALGSSAARKVGELSRLTGGLKFFIPDKFTSNGMTEAFVRISSGTGDI FQQSLQVESVCETVQPQHQLADTMTVDSAVGNDTLFLVTWQTGGPPEIALLDPSGRKYNTGDFIINLAFR TASLKIPGTAKHGHWTYTLNNTHHSPQALKVTVASRASSLAMSPATLEAFVERDSTYFPQPVIIYANVRK GLHPILNATVVATVEPEAGDPVVLQLLDGGAGADVIRNDGIYSRYFSSFAVSGSYSLTVHVRHSPSTSTL ALPVPGNHAMYVPGYITNDNIQMNAPKNLGHRPVKERWGFSRVSSGGSFSVLGVPDGPHPDMFPPCKITD LEAMKVEDDVVLSWTAPGEDFDQGQTTSYEIRMSRSLWNIRDDFDNAILVNSSELVPQHAGTRETFTFSP KLVTHELDHELAEDAQEPYIVYVALRAMDRSSLRSAVSNIALVSMSLPPNSSPVVSRDDLILKGVLTTVG LIAILCLIMVVAHCIFNRKKRPSRKENETKFL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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