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Report for CCDS23723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23723.1 Public Mus musculus 10 Aldh8a1 23 108 98 CCDS HistoryNCBI Gene:237320Re-query CCDS DB by CCDS ID:23723.1Re-query CCDS DB by GeneID:237320See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042699.13 ENSMUSP00000038878.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042699.13Link to Ensembl Protein Viewer:ENSMUSP00000038878.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042699Re-query CCDS DB by Protein ID:ENSMUSP00000038878
Original member Current member NCBI NM_178713.4 NP_848828.1 Accepted alive Link to Nucleotide Sequence:NM_178713.4Link to Protein Sequence:NP_848828.1Re-query CCDS DB by Nucleotide ID:NM_178713Re-query CCDS DB by Protein ID:NP_848828Link to BLAST:NP_848828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848828.1 487 Q8BH00 487 100% 0 0

Chromosomal Locations for CCDS 23723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 21377341 21377478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21380830 21380977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21382292 21382447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21384636 21384785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21389068 21389324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21391567 21391728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 21395388 21395840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGCTGGAAAAAGGGAACTTTTGATGTTGGAGAACTTTATAGGTGGGAAGTTTTTACCCTGTAACTCAT
ATATAGATTCTTACGATCCATCAACAGGGGAAGTTTATTGCAAAGTTCCAAACAGTGGGAAAGAAGAGAT
TGAAGCTGCCGTGGAGGCTGCCAGAGAGGCCTTCCCTGCCTGGTCATCCCGGAGTCCCCAGGAACGTTCT
CTCGTCCTGAACAGGCTGGCTGATGTACTGGAGCAGTCTCTGGAGGAGTTAGCTCAGGCAGAATCTAAAG
ACCAAGGGAAAACCCTCACGCTGGCAAGGACCATGGACATTCCTCGGTCTGTTCTGAACTTCCGGTTCTT
CGCTTCCTCCAACCTGCACCACGTATCGGAGTGCACACAGATGAGCCACCTGGGCTGTATGCATTACACC
GTTCGCACCCCGGTGGGAATTGCTGGTTTGATCAGCCCTTGGAATTTACCACTCTACCTGCTGACCTGGA
AGATAGCTCCGGCCATCGCTGCTGGGAATACCGTGATAGCCAAGCCCAGTGAGATGACTTCTGTGACTGC
CTGGATGTTTTGTAAACTCTTGGATAAAGCAGGTGTCCCACCAGGTGTGATCAACATTGTGTTTGGAACA
GGGCCGAGGGTTGGTGAAGCCCTTGTGTCTCACCCCGAGGTACCCTTGATCTCGTTCACTGGGAGCCAGC
CCACAGCTGAACGGATTACCCAGCTCAGTGCCCCCCACTGCAAGAAGCTTTCCCTGGAGCTGGGAGGCAA
GAATCCTGCTATCATCTTTGAGGATGCCAACCTGGAGGAGTGTATCCCGGCAACCGTTAGGTCCAGCTTT
GCTAACCAGGGGGAGATTTGCCTTTGTACCAGTAGAATCTTTGTCCAGAGAAGCATCTACAGTGAATTTC
TGAAGAGGTTTGTGGAAGCTACCAGAAAGTGGAAAGTTGGTGTTCCTTCTGACCCATCAGCCAACATGGG
TGCTCTGATAAGCAAAGCACATTTGGAGAAAGTCAGAAGTTATGTCTTGAAAGCTCAGACTGAGGGTGCC
CGGATTCTCTGTGGTGAGGGTGTGGACCAGCTGAGCCTTCCACTCAGGAACCAGGCAGGCTACTTCATGC
TTCCCACGGTGATAACAGACATTAAGGATGAGTCCCGCTGCATGACGGAAGAGATCTTTGGTCCAGTGAC
GTGTGTTGTTCCGTTTGATAGTGAAGAGGAAGTGATTACGAGAGCTAACAGTGTTAGATACGGGCTGGCA
GCCACAGTGTGGTCCAAGGATGTGGGGCGCATCCACAGGGTAGCTAAGAAGCTTCAGTCGGGGCTGGTCT
GGACCAACTGCTGGCTCATCAGGGAGCTGAACCTGCCCTTTGGAGGGATGAAGAGCTCTGGAATAGGAAG
AGAAGGAGCCAAGGACTCATATGACTTCTTTACTGAAATAAAAACCATTACCATTAAATACTGA

Translation (487 aa):
MAGKRELLMLENFIGGKFLPCNSYIDSYDPSTGEVYCKVPNSGKEEIEAAVEAAREAFPAWSSRSPQERS
LVLNRLADVLEQSLEELAQAESKDQGKTLTLARTMDIPRSVLNFRFFASSNLHHVSECTQMSHLGCMHYT
VRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSEMTSVTAWMFCKLLDKAGVPPGVINIVFGT
GPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECIPATVRSSF
ANQGEICLCTSRIFVQRSIYSEFLKRFVEATRKWKVGVPSDPSANMGALISKAHLEKVRSYVLKAQTEGA
RILCGEGVDQLSLPLRNQAGYFMLPTVITDIKDESRCMTEEIFGPVTCVVPFDSEEEVITRANSVRYGLA
ATVWSKDVGRIHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGAKDSYDFFTEIKTITIKY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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