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Report for CCDS19385.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19385.3 Public Mus musculus 5 Ugt2b5 23 108 98 CCDS HistoryNCBI Gene:22238Re-query CCDS DB by CCDS ID:19385.3Re-query CCDS DB by GeneID:22238See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 19385.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067790.6 ENSMUSP00000068282.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067790.6Link to Ensembl Protein Viewer:ENSMUSP00000068282.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067790Re-query CCDS DB by Protein ID:ENSMUSP00000068282
Original member Current member NCBI NM_009467.3 NP_033493.3 Accepted alive Link to Nucleotide Sequence:NM_009467.3Link to Protein Sequence:NP_033493.3Re-query CCDS DB by Nucleotide ID:NM_009467Re-query CCDS DB by Protein ID:NP_033493Link to BLAST:NP_033493.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033493.3 530 P17717 530 99.8113% 0 1

Chromosomal Locations for CCDS 19385.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87125213 87125492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87127678 87127897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87128321 87128408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87136094 87136225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87137204 87137352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87139583 87140306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCCTGGAAAGTGGATTTCTGCTCTGCTGCTGCTGCAGATAAGTTGCTGCTTCAGATCTGTGAAATGTG
GGAAAGTGTTGGTGTGGCCGATGGAATTCAGTCATTGGATGAACATAAAAATAATACTGGATGAACTGGT
ACAGAGAGGCCATGAAGTCACTGTTCTGAGACCTTCAGCTTACTATGTTCTTGATCCCAAAAAATCACCT
GGCCTTAAGTTTGAAACTTTTCCTACATCTGTCAGTAAAGACAATCTGGAAAATTTTTTCATTAAGTTTG
TGGATGTGTGGACTTATGAAATGCCAAGGGATACATGTTTGTCATATTCTCCTTTACTGCAAAATATGAT
TGATGAATTTTCTGATTATTTTCTAAGTCTTTGTAAAGATGTTGTTTCAAACAAAGAGCTCATGACAAAG
CTACAGGAATCCAAGTTTGATGTCCTTTTGTCAGATCCTGTTGCTTCCTGTGGGGAGCTCATAGCTGAAC
TGCTCCAGATTCCTTTTCTGTACAGTATCCGCTTCTCTCCAGGCTACCAAATTGAAAAGTCCAGCGGGAG
ATTTCTACTCCCTCCCTCTTATGTACCTGTAATTCTGTCAGGATTAGGTGGACAAATGACATTCATAGAG
AGGATAAAAAATATGATATGCATGCTTTATTTTGACTTTTGGTTCCAGATGTTTAATGATAAGAAATGGG
ACTCATTTTACAGTGAGTATTTGGGAAGGCCAACCACCTTAGTTGAGACAATGGGCCAAGCAGAAATGTG
GCTCATTAGATCCAACTGGGATTTGGAGTTTCCTCACCCAACCTTACCAAATGTTGACTATGTTGGAGGA
CTCCATTGCAAACCTGCTAAACCCTTGCCTAAGGATATGGAAGAATTTGTCCAGAGCTCTGGAGACCATG
GTGTGGTGGTCTTTTCTCTTGGGTCAATGGTTAGTAACATGACAGAAGAAAAAGCCAACGCAATTGCATG
GGCCCTTGCCCAGATTCCACAAAAGGTTCTTTGGAAATTTGATGGCAAAACCCCAGCAACTTTAGGACAC
AATACCAGAGTGTACAAGTGGCTCCCCCAGAATGACCTCCTTGGTCATCCAAAAACCAAAGCCTTTGTAA
CTCATGGTGGGGCCAATGGTGTCTACGAGGCGATCTATCATGGAATCCCTATGATTGGCATTCCTTTGTT
TGGAGAACAGCATGATAACATTGCCCATATGGTGGCCAAAGGAGCAGCTGTTGCATTGAATATCAGAACA
ATGTCAAAGTCAGATGTGCTCAATGCACTGGAGGAGGTCATAGAAAATCCTTTCTATAAAAAGAATGCTA
TGTGGTTGTCAACCATTCACCATGACCAGCCTATGAAACCCCTGGACAGGGCTGTCTTCTGGATTGAGTT
TGTTATGCGCCACAAAAGAGCCAAGCACCTGAGACCACTTGGACATAACCTTACCTGGTACCAGTACCAC
TCTCTGGATGTGATTGGATTCCTACTCTCTTGTGTGGCAACCACTATAGTCCTTAGTGTAAAGTGCCTCT
TGTTCATTTACCGATTCTTTGTAAAGAAAGAAAATAAAATGAAGAATGAGTAG

Translation (530 aa):
MPGKWISALLLLQISCCFRSVKCGKVLVWPMEFSHWMNIKIILDELVQRGHEVTVLRPSAYYVLDPKKSP
GLKFETFPTSVSKDNLENFFIKFVDVWTYEMPRDTCLSYSPLLQNMIDEFSDYFLSLCKDVVSNKELMTK
LQESKFDVLLSDPVASCGELIAELLQIPFLYSIRFSPGYQIEKSSGRFLLPPSYVPVILSGLGGQMTFIE
RIKNMICMLYFDFWFQMFNDKKWDSFYSEYLGRPTTLVETMGQAEMWLIRSNWDLEFPHPTLPNVDYVGG
LHCKPAKPLPKDMEEFVQSSGDHGVVVFSLGSMVSNMTEEKANAIAWALAQIPQKVLWKFDGKTPATLGH
NTRVYKWLPQNDLLGHPKTKAFVTHGGANGVYEAIYHGIPMIGIPLFGEQHDNIAHMVAKGAAVALNIRT
MSKSDVLNALEEVIENPFYKKNAMWLSTIHHDQPMKPLDRAVFWIEFVMRHKRAKHLRPLGHNLTWYQYH
SLDVIGFLLSCVATTIVLSVKCLLFIYRFFVKKENKMKNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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