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Report for CCDS19711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19711.1 Public Mus musculus 5 Tyw1 23 108 98 CCDS HistoryNCBI Gene:100929Re-query CCDS DB by CCDS ID:19711.1Re-query CCDS DB by GeneID:100929See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044204.11 ENSMUSP00000047318.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044204.11Link to Ensembl Protein Viewer:ENSMUSP00000047318.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044204Re-query CCDS DB by Protein ID:ENSMUSP00000047318
Original member Current member NCBI NM_178897.4 NP_849228.1 Accepted alive Link to Nucleotide Sequence:NM_178897.4Link to Protein Sequence:NP_849228.1Re-query CCDS DB by Nucleotide ID:NM_178897Re-query CCDS DB by Protein ID:NP_849228Link to BLAST:NP_849228.1

Chromosomal Locations for CCDS 19711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 130255642 130255645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130258933 130259054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130262819 130262941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130266983 130267084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130267895 130268089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130269166 130269447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130274621 130274743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130277933 130278050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 130281781 130282076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGGTCCTCTGGATGTGTGGGACTTGTCGCCTTTGCTGTCACTGTGGATGAACAGGTTCTACATATATA
TGGGCTGTGCCCTGGGCCTTACCCTTTGCATCTGTGTCCAGATCATCAAGAAGCAGGTCACTCGTTCCCA
GGAGAAACGTGTCCCAGGAGCTCCTGATAGCTCCCTCTCCCCTCAGAAGAAGCAGACACACGTTTCTGGA
GTGAAGATTTTTTACGGATCTCAGACGGGCACTGCCAAGGGATTTGCAGTGGTTCTTGCCAAAGCTGTCA
CCTCTCTGGACCTGCCTGTGGCCATTATTAATCTGAAGGAATATGATCCAGATGACAGTCTGATAGGAGA
GATCACTAGTAAAACCGTCTGTGCCTTCCTGGTCGCTACGTACACGGACGGCTGCCCTACAGAGAGTGCA
GAGTGGTTCTGCAAGTGGTTAGAGGAATCAGCTAATGATTTCCGCTTTGGCAAAACTTACCTGAAGGGAC
TTCGCTATGCAGTGTTTGGCCTGGGAGACTCTGCCTACCGGAGCCACTTCAACAAGGTCAGCACGAACGT
TGACAAATGGCTCTGGATGCTCGGTGCCCAGCGGGTGCTGACCCGAGGGGAAGGCGACTGCAATGCAGTT
CAGAGCAAACATGGCAGCATCGAGGCCGACTTCACAGCCTGGAAGACCAAGTTCATCTCCCGGCTGCAGG
CCCTGCAGAGAGGGGAGAAAAAGGCTTGTGGCGGGAACTGCAAGAGAGGGAAGTGTGAGTCGGCCCAGCA
TGGCCCAGGAGAGGCGCGGCCTCACCCGCAAGGCGAATTGCATCCTGGGGATGCTGAGGAGGAAGAGCCC
TGTGAGAGCAGCAGCGAGGACGAGCTCGGGACCCAGGATTATCAGAGCCTGACTTCTGTGGTGGATGTTG
AGGACCTGGGCAACATCATGAACCCCGTGAAGAGGGAAAAGAGAGAAAAGTCTCATCAGGACGGGAAAGC
TGCCATGCAGAGGAACCCAGAGAAGACTGAGGACGGCGAAGGAAGAGCTATGATAACACCTGCTCTGCGG
GAAGCCCTGACTAAACAAGGGTACCAGCTGATTGGCAGCCACTCTGGTGTGAAGCTTTGCAGGTGGACAA
AGGTATTTATTGGTTTTATTCAAATATTATTTCTATTTTCTGCAACTTATTTATTTTTGTCCATTTATTT
TGTGTGTGCGCACATGTGTGGCGGTCAGAGCACAGCCTACAGGATTTGGTTCTCTTTGTGGGCTCTGGGG
ACCAAACTGTCTTTTAGTGTGACAGCAGCCACTTGGATGGCTCCGGTATGGTTCTCAGCAGTGCTGTTGT
GGTATACTTCACATGCAGTACGTGGCTCACGTTAG

Translation (454 aa):
MGPLDVWDLSPLLSLWMNRFYIYMGCALGLTLCICVQIIKKQVTRSQEKRVPGAPDSSLSPQKKQTHVSG
VKIFYGSQTGTAKGFAVVLAKAVTSLDLPVAIINLKEYDPDDSLIGEITSKTVCAFLVATYTDGCPTESA
EWFCKWLEESANDFRFGKTYLKGLRYAVFGLGDSAYRSHFNKVSTNVDKWLWMLGAQRVLTRGEGDCNAV
QSKHGSIEADFTAWKTKFISRLQALQRGEKKACGGNCKRGKCESAQHGPGEARPHPQGELHPGDAEEEEP
CESSSEDELGTQDYQSLTSVVDVEDLGNIMNPVKREKREKSHQDGKAAMQRNPEKTEDGEGRAMITPALR
EALTKQGYQLIGSHSGVKLCRWTKVFIGFIQILFLFSATYLFLSIYFVCAHMCGGQSTAYRIWFSLWALG
TKLSFSVTAATWMAPVWFSAVLLWYTSHAVRGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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