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Report for CCDS27256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27256.1 Public Mus musculus 14 Reep4 23 108 98 CCDS HistoryNCBI Gene:72549Re-query CCDS DB by CCDS ID:27256.1Re-query CCDS DB by GeneID:72549See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047218.4 ENSMUSP00000040162.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047218.4Link to Ensembl Protein Viewer:ENSMUSP00000040162.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047218Re-query CCDS DB by Protein ID:ENSMUSP00000040162
Original member Current member NCBI NM_180588.2 NP_850919.1 Accepted alive Link to Nucleotide Sequence:NM_180588.2Link to Protein Sequence:NP_850919.1Re-query CCDS DB by Nucleotide ID:NM_180588Re-query CCDS DB by Protein ID:NP_850919Link to BLAST:NP_850919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_850919.1 257 Q8K072 257 100% 0 0

Chromosomal Locations for CCDS 27256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70545707 70545738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70546477 70546549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70546930 70547006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70547115 70547235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70547667 70547780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70547940 70548075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70548185 70548339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70548430 70548495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTGTCCTGGATGATCTGTCGCCTGGTAGTGCTCATATTTGGCATGCTGTATCCTGCGTATGCTTCCT
ACAAGGCCGTGAAGAGCAAGAACATTCGAGAATATGTACGGTGGATGATGTATTGGATTGTCTTTGCGAT
CTTCATGGCAGCAGAAACCTTCACAGACATCTTCATTTCCTGGTTCCCGTTTTATTACGAGTTCAAGATG
GCTTTTGTGCTGTGGCTGCTCTCACCTTACACCAAGGGGGCCAGCCTGCTTTACCGAAAGTTTGTCCACC
CATCCCTATCCCGCCATGAGAAGGAGATCGACGCGTGTATCGTGCAGGCAAAGGAGCGCAGCTATGAAAC
CATGCTCAGTTTTGGGAAGCGGAGCCTCAACATCGCTGCCTCAGCTGCTGTGCAGGCTGCTACCAAGAGT
CAAGGCGCTCTAGCTGGAAGGCTGCGGAGTTTCTCTATGCAAGACCTGCGCTCTATCCCTGACACCCCTG
TCCCCACCTACCAAGATCCCCTCTACCTGGAAGACCAGGTACCCCGACGTAGACCCCCTATTGGATACCG
GCCAGGCGGCCTGCAGGGCAGTGACACAGAGGATGAGTGTTGGTCAGACAATGAGATCGTCCCCCAGCCA
CCTGTTCGGCCCCGAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGA
CTCGAGAGGGCACCTCACGCTCCCTGAAGGTCCGAACCCGGAAAAAGGCCATGCCCTCAGACATGGACAG
CTAG

Translation (257 aa):
MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKM
AFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKS
QGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQP
PVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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