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Report for CCDS25940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25940.1 Public Mus musculus 12 Fkbp3 23 108 98 CCDS HistoryNCBI Gene:30795Re-query CCDS DB by CCDS ID:25940.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021332.9 ENSMUSP00000021332.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021332.9Link to Ensembl Protein Viewer:ENSMUSP00000021332.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021332Re-query CCDS DB by Protein ID:ENSMUSP00000021332
Original member Current member NCBI NM_013902.4 NP_038930.1 Accepted alive Link to Nucleotide Sequence:NM_013902.4Link to Protein Sequence:NP_038930.1Re-query CCDS DB by Nucleotide ID:NM_013902Re-query CCDS DB by Protein ID:NP_038930Link to BLAST:NP_038930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038930.1 224 Q62446 224 100% 0 0

Chromosomal Locations for CCDS 25940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 65062686 65062740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65063678 65063775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65065737 65065804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65066642 65066777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65069002 65069109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65069951 65070052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65073815 65073922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCGGCGGCTGTTCCGCAGCGTGCATGGACCGTGGAGCAGCTGCGCAGCGAGCAGCTGCCCAAGAAGG
ACATTATCAAGTTTCTGCAGGATCACGGTTCAGATTCGTTTCTTGCAGAGCATAAATTACTGGGAAACAT
CAAAAATGTTGCCAAGACTGCTAATAAGGACCATTTGGTTAATGCCTATAACCATCTTTTTGAAAGTAAG
CGTTTCAAGGGTACTGAAACTATAAGTAAAGTGTCTGAACAGGTGAAAAATGTGAAGCTTAGTGACGACA
AACCCAAAGACTCCAAGTCTGAAGAGACTCTTGATGAGGGTCCACCAAAATACACAAAATCTATTCTAAA
AAAGGGAGATAAAACCAACTTTCCTAAAAAGGGGGATGTTGTTCACTGCTGGTATACAGGGACACTCCCA
GATGGGACTGTTTTTGATACTAATATTCAAACAAGTTCAAAGAAGAAGAAAAATGCCAAACCTTTAAGTT
TTAAGGTCGGAGTAGGCAAGGTTATCAGAGGATGGGATGAAGCGCTCTTGACTATGAGTAAAGGAGAAAA
GGCTCGACTGGAGATCGAACCAGAATGGGCCTACGGAAAGAAAGGACAGCCCGATGCCAAAATTCCACCA
AACACCAAGCTCATTTTTGAAGTGGAATTAGTAGACATTGACTGA

Translation (224 aa):
MAAAVPQRAWTVEQLRSEQLPKKDIIKFLQDHGSDSFLAEHKLLGNIKNVAKTANKDHLVNAYNHLFESK
RFKGTETISKVSEQVKNVKLSDDKPKDSKSEETLDEGPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLP
DGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPP
NTKLIFEVELVDID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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