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Report for CCDS40524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40524.1 Public Mus musculus 8 Ccdc7a 23 108 98 CCDS HistoryNCBI Gene:74703Re-query CCDS DB by CCDS ID:40524.1Re-query CCDS DB by GeneID:74703See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095158.10 ENSMUSP00000092780.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095158.10Link to Ensembl Protein Viewer:ENSMUSP00000092780.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095158Re-query CCDS DB by Protein ID:ENSMUSP00000092780
Original member Current member NCBI NM_029061.3 NP_083337.1 Accepted alive Link to Nucleotide Sequence:NM_029061.3Link to Protein Sequence:NP_083337.1Re-query CCDS DB by Nucleotide ID:NM_029061Re-query CCDS DB by Protein ID:NP_083337Link to BLAST:NP_083337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083337.1 371 Q9D541 371 100% 0 0

Chromosomal Locations for CCDS 40524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 128980031 128980183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 128984955 128985044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 128985380 128985410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 128988760 128988832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 128993023 128993079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129000803 129000864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129026599 129026750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129027349 129027381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129027646 129027666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129047609 129047692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129058718 129058804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 129061574 129061846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGAAATGTGCAAAGCATCCATCAACCATTAGTATGAAATTGACAAGTGTTCCAGAATTACCTTATAAGA
AAGGCTTACTGAATTCATCACCTAAGCCAAAAGAAAAACATAATGCCAAGTCAAAGTATGGTAAAAATGA
ATCAATGGTCCTGAGGTCGCCACCCACAGGAGAGTCAATTGTACGCTTTGCCTTGCCAATACCATTGAGT
AAAACGAAGGACAAAATATCAGCTGATGAAATGGTCAGGAGGATTACCACAAATCTGAAGATGGTTGTTT
CTAACTTGGAAGACACCTATGGAGCTTGCTATGATAATGGAGAAAAAGCAGCAGAAAAAAGTGAAGCAGA
AGGCTTGTCTATTGGTGATGATGTGAGTTCGTTCTTGTTGTGCTGTTCACAATTTACATCTCAGCTGGAA
GAAGCAGTTAAGGAAGAATGTGGCGCTTTGGAGTCTCTTTACAAGTGGTTTCAGCAACAAGTCAACCAAA
TGGAGGAGATTAGCAAGGACCAAAGTAATTTAGAAGAACTTCAATCAGATGGTAAAACGGCCAGTTTGAA
CATTGTACAAATTGCAAAACTGGCACGTAAATTCGAAGATTTTAAAAGTCGCCTAAAAACGCGCAAGGAG
GTCATGCAGACTAAAAATGAGGATAAAGAGATAATGGCAGAAACATTGAAACATTATGGACTTATGGAAA
AGCAGATTGAAGAGTTCATAACATCCCATTCAGCTTTAGAATCTCAAACTGAAACTGAAAGTCAGTCAGG
AACTCCTTCAGTGACTACTCGGATGGCCAGGATGATAAAAATATTTGAAAATCAGTCAACTATGTTAGAG
AAAGCTTTAAATGATCAGCAAACAATTGAGTCTAAATATAAACAGTTGGAAACTGATTTTCAAATGTTAA
TAATGGAGAAAACCCTGCTGGAAGCAGAAATACGAAGGCTGAGAGAAATAGAGAGAGTAAAGTCTGCAGC
CAAAGAAGAGCAAACCAAGAAATCTGGAAAATCAGAAAAGAAAAAATTTAAAGAGAAGGAAAAGTACGAC
ATGAAGATATGTTATCTTTTTATTCCTCAACTTGTAAAAATGTACCTTAATCACGGTTTATTTTAA

Translation (371 aa):
MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLS
KTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLE
EAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKE
VMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLE
KALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKYD
MKICYLFIPQLVKMYLNHGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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