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Report for CCDS15891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15891.1 Public Mus musculus 2 Tor1a 23 108 98 CCDS HistoryNCBI Gene:30931Re-query CCDS DB by CCDS ID:15891.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028200.8 ENSMUSP00000028200.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028200.8Link to Ensembl Protein Viewer:ENSMUSP00000028200.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028200Re-query CCDS DB by Protein ID:ENSMUSP00000028200
Original member Current member NCBI NM_144884.2 NP_659133.1 Accepted alive Link to Nucleotide Sequence:NM_144884.2Link to Protein Sequence:NP_659133.1Re-query CCDS DB by Nucleotide ID:NM_144884Re-query CCDS DB by Protein ID:NP_659133Link to BLAST:NP_659133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659133.1 333 Q9ER39 333 100% 0 0

Chromosomal Locations for CCDS 15891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30960947 30961197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30963475 30963602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30963694 30963869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30967090 30967355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30967674 30967854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGAAGCTTGGCCGGGCCGCTCTGGCCCTGCTGCTGCTGGCGCCGTGCGTGGTTCGTGCGGTGGAGCCCA
TCAGCCTGAGTCTGGCCCTGGCCGGCGTACTCACCACCTATATCTCCTACCCTCGTCTCTACTGCCTCTT
CGCCGAGTGCTGCGGCCAGATGCGGAGCCTCAGCCGGGAGGCGCTGCAGAAAGATCTGGATAACAAGCTC
TTTGGACAGCATCTTGCAAAAAAAGTCATCCTAAACGCCGTGTCTGGTTTCCTAAGCAACCCGAAGCCCA
AGAAGCCCCTTACCCTCTCTCTGCACGGGTGGACGGGCACCGGCAAAAACTTCGCCAGCAAGATCATCGC
GGAGAATATTTACGAGGGCGGACTGAACAGTGACTATGTACACCTGTTTGTGGCCACGCTACACTTCCCC
CACGCCTCTAACATCACACAGTATAAGGACCAGTTACAGATGTGGATCAGAGGCAACGTGAGCGCCTGTG
CTCGCTCCATCTTCATCTTTGATGAGATGGACAAGATGCATGCCGGCCTCATCGACGCCATCAAGCCTTT
CCTAGACTATTACGATGTGGTAGATGAGGTCTCCTATCAGAAAGCCATCTTCATCTTCCTCAGCAATGCA
GGGGCAGAGAGGATCACAGACGTGGCTCTGGATTTCTGGAAAAGTGGGAAGCAGAGGGAAGAAATCAAGC
TCAGAGACATGGAGCCCGCCCTGGCCGTGTCGGTCTTCAATAACAAGAACAGTGGCTTCTGGCACAGCAG
CCTCATTGACCGGAACCTCATAGATTATTTTGTCCCCTTCCTGCCCCTGGAGTACAAGCACCTGAAAATG
TGCATCAGAGTGGAGATGCAGTCCCGAGGCTATGAAGTAGATGAGGACATCATCAGCAAGGTAGCGGAAG
AGATGACGTTCTTCCCCAAGGAGGAGAAGGTCTTCTCTGACAAGGGCTGCAAGACTGTGTTCACCAAGCT
GGACTACTACCTGGATGACTGA

Translation (333 aa):
MKLGRAALALLLLAPCVVRAVEPISLSLALAGVLTTYISYPRLYCLFAECCGQMRSLSREALQKDLDNKL
FGQHLAKKVILNAVSGFLSNPKPKKPLTLSLHGWTGTGKNFASKIIAENIYEGGLNSDYVHLFVATLHFP
HASNITQYKDQLQMWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDVVDEVSYQKAIFIFLSNA
GAERITDVALDFWKSGKQREEIKLRDMEPALAVSVFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKM
CIRVEMQSRGYEVDEDIISKVAEEMTFFPKEEKVFSDKGCKTVFTKLDYYLDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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