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Report for CCDS20403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20403.1 Public Mus musculus 6 Lmcd1 23 108 98 CCDS HistoryNCBI Gene:30937Re-query CCDS DB by CCDS ID:20403.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032376.5 ENSMUSP00000032376.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032376.5Link to Ensembl Protein Viewer:ENSMUSP00000032376.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032376Re-query CCDS DB by Protein ID:ENSMUSP00000032376
Original member NCBI NM_144799.2 NP_659048.1 Updated not alive Link to Nucleotide Sequence:NM_144799.2Link to Protein Sequence:NP_659048.1Re-query CCDS DB by Nucleotide ID:NM_144799Re-query CCDS DB by Protein ID:NP_659048
Current member NCBI NM_144799.3 NP_659048.1 Accepted alive Link to Nucleotide Sequence:NM_144799.3Link to Protein Sequence:NP_659048.1Re-query CCDS DB by Nucleotide ID:NM_144799Re-query CCDS DB by Protein ID:NP_659048Link to BLAST:NP_659048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659048.1 365 Q8VEE1 365 100% 0 0

Chromosomal Locations for CCDS 20403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112273931 112273972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112305049 112305137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112310486 112310741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112315576 112315911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112328663 112328878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112329808 112329966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGCAAAAGTGGCTAAGGACCTCAACCCTGGAGTGCAAAAGATGTCCTTGGGCCAGCAGCAGTCCGCAA
GAGGAGTGGCTTGTCTGCGGTGCAAGGGAATGTGCTCCGGCTTCGAGCCTCACTCGTGGAGGAAAATATG
CAAGTCTTGTAAATGCAGCCAGGAGGAGCACTGCCTAAGCTCTGACCTGGACGATGATCGGAAAATTGGG
CGCCTGCTGATGGACTCCAAGTATGCCACTCTCACCGCCAGGGTGAAAGGCGGAGACGGCATCCGCATCT
ATAAGAGGAACCGCATGATCATGACCAACCCCATCGCCACCGGCAAAGACCCCACCTTTGACACTATCAC
CTACGAGTGGGCTCCCCCAGGAGTCACCCAGAAACTGGGCCTGCAGTACATGGAACTCATCCCCAAGGAG
AGGCAGCCTGTGACAGGCACTGAGGGTGCCCTCTACCGCCGACGCCAGCTCATGCATCAGCTCCCTATCT
ATGACCAGGACCCCTCTCGATGCCGTGGACTTGTGGAGAATGAGCTGAAAGCTATGGAGGAGTTCGTCAA
GCACTACAAGAGCGAGGCCCTTGGGGTGGGCGAGGTGGCCCTCCCAGGGCAGGGAGGCTTGCCCAAGGAA
GAAAACAAGACACAGGAAAAGCCAGAGGGCACAGAGACCACTGCCCCAACCACCAATGGCAGCCTGGGTG
ATCCATCCAAAGAAGTGGAATACGTCTGTGAGCTCTGCAAGGGAGCAGCCCCAGTTGACAGCCCTGTGGT
CTACGCTGACAGGGCTGGATACAGCAAACAGTGGCACCCCACGTGCTTTCAGTGTATCAAGTGCTCAGAG
CCACTGGTGGACCTCATCTACTTCTGGAAGGATGGTGCACCCTGGTGTGGCCGCCACTACTGTGAGAGTG
TGCGGCCCCGGTGCTCAGGCTGTGATGAGATCATCTTCTCAGAAGACTACCAGCGTGTGGAAGACCTGGC
CTGGCATCGGAAGCACTTCATTTGCGAGGGCTGTGAGCAGCTGCTGAGCGGCCGTGCGTACATCGTCACC
AAGGGTCAGCTCCTGTGCCCCACATGCAGCAAGTCAAAACGCTCCTGA

Translation (365 aa):
MAKVAKDLNPGVQKMSLGQQQSARGVACLRCKGMCSGFEPHSWRKICKSCKCSQEEHCLSSDLDDDRKIG
RLLMDSKYATLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKE
RQPVTGTEGALYRRRQLMHQLPIYDQDPSRCRGLVENELKAMEEFVKHYKSEALGVGEVALPGQGGLPKE
ENKTQEKPEGTETTAPTTNGSLGDPSKEVEYVCELCKGAAPVDSPVVYADRAGYSKQWHPTCFQCIKCSE
PLVDLIYFWKDGAPWCGRHYCESVRPRCSGCDEIIFSEDYQRVEDLAWHRKHFICEGCEQLLSGRAYIVT
KGQLLCPTCSKSKRS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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