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Report for CCDS27731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27731.1 Public Mus musculus 15 Zbed4 23 108 98 CCDS HistoryNCBI Gene:223773Re-query CCDS DB by CCDS ID:27731.1Re-query CCDS DB by GeneID:223773See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041297.14 ENSMUSP00000035437.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041297.14Link to Ensembl Protein Viewer:ENSMUSP00000035437.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041297Re-query CCDS DB by Protein ID:ENSMUSP00000035437
Original member NCBI NM_181412.3 NP_852077.1 Updated not alive Link to Nucleotide Sequence:NM_181412.3Link to Protein Sequence:NP_852077.1Re-query CCDS DB by Nucleotide ID:NM_181412Re-query CCDS DB by Protein ID:NP_852077
Current member NCBI NM_181412.4 NP_852077.1 Accepted alive Link to Nucleotide Sequence:NM_181412.4Link to Protein Sequence:NP_852077.1Re-query CCDS DB by Nucleotide ID:NM_181412Re-query CCDS DB by Protein ID:NP_852077Link to BLAST:NP_852077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852077.1 1168 Q80WQ9 1168 100% 0 0

Chromosomal Locations for CCDS 27731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 88779731 88783237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3507 nt):
ATGGAGGATAAGCAAGAAACTTGTCCCAAGGGGGACAGTGATTTTGTTTCTGACAAAGTAAATTTCAAAA
CGGAGGAAGATGATGATCAAACTCCTTGTCACAGTTTGGAACAAGTGGACTTTAAAAGTGAGTCAGAGGA
TATGAGACAGACAGACAGTGGCGATGAACAGGCAGACATCAGGGCAGCGAGCTGTGCCTGTCAGCCCTCT
GGGAAGTTCTTAGCTGCCGAGAGTGAGGATGACTATGGCTCACTCTTCTCCCAGTATAGTAGCACACTGT
ACAGCGTAGCCATGGAAGCTGTGACCCAGAGCCTTCTTTCCAGTCGACACATAAGCTCCAGGAAGAAGTC
TCCAGCCTGGAAGCATTTCTTTATTTCCCCTCGAGATAGCACTAAGGCTATCTGCACATACTGTATGAAA
GAGTTCAGTAGGGGCAAGAATGAGAAAGACCTGAGTACAAGTTGCCTCATGAGACATGTGAGGCGGGCAC
ACCCCACCAAGCTCATTCAAGAAAATGGAAGTCTATCGGCAGGGTCCTCCTTTTCCCCTCCCTCTCTGTT
GCTTCCACCACAGCCTGCAGATGTGGGAGACCTTAGCACTGTGCTCTCGCCTGTCAGACTTGTCCAGAAA
ATGGCTCCCAAGATCCCATCCCCTGACCAAATAATGGAAGAGTCTGTGACTGTAGTTTCTTCTGAAGAGT
TGTCCTCTGATGTGTCTGTCACTGAAAAGTACAGCAGAGAGGAGGCCTTGGCAGGCTCCTCCCCCAACCT
CTCCATGCTCCATTATGACGACGCTTCAGAAACCATGGCAGACAGAAACCTTTCTCTTCCCAAAAGCACA
TCTGGGTCCAGGAGGAGGTCAGCCGTCTGGAAGCACTTCTACTTGTCACCCCTTGATAGCTCCAAGGCTG
TCTGTGTCCACTGTATGAATGAGTTCAGTAGAGGGAAAAATGGGAAGGACCTGGGTACAAGCTGCCTCAT
CAGGCACATGTGGAGAGCACATCGCTCCATTGTACTGCAGGAGAACGGGGGCAACACAGGCATCCCACCA
TTGTACCCTATGCCCCCCACCCTGCTGCCTGCCCTGCTGCCCCCAGAAGGGGATCTCAACTCCGCATCGT
TGTCTCCAGGCAAACAAGTCAAAGAGTCCCCTTCTGCCTCCTCATCCCCAGAAAGGCTTCCGGAGGACCT
GTCATCACACACTAATCCTGGGGATGTATCCCGGGAAGATGTGTCCATGTTGTCATCCTCTGATGACTTG
GGGGAGGCCTCTGTAGTGTCTTCTCCAGAGAAGCAGCCAGCGGACACGGTAAATCCAAGGTTTGAATCAG
GTACTGTTTTCCAGCAAAATAAGAAGGTGATGAGAAGACTAAAGTCAGAAGTCTGGCATCACTTTTCCCT
GGCCCCCATGGACAGTCTCAAAGCAGTGTGCCGGTACTGTAGCTGCGTTATTAGTCGGGGGAAGAAGGGA
GATGTTGGCACCAGTTGTTTGATGCGACACCTGTACAGACGCCACCCTGAGGTGGTTGGGAACCAGAAGG
ACTTTCTGGGTGCAAGTTTGGCAAACTCTCCATATGCCACTTTGGCTTCTGCAGAAAGCTCCTCCAAGTT
AACTGACTTGCCAGCAGTGGTCAGAAAAAACCATCAAGGTGTGTTTCCTACTAATAGCAAGAAGACCTCA
AAGCTGTGGAATCACTTTTCTATTTGTTCAGCAGACTCAACAAAGGTGGTGTGCCTGCACTGTGGCCGGA
CCATCAGCAGGGGCAAGAAACCCACCAACCTGGGCACCAGCTGTCTCCTGAGACATCTGCAGCGGTTCCA
TGGCCATGTACTCAAGAATGATGTCTCAGAGGCCACTCTGTCCCGTTCTCCAGGCATCCGGAGGCCTCTG
GGCATAGAGCTCTCAGGGCCTTCCTCTTTCCGTGACTCCACAGAGAAGTTCTATGACTCTCATCCAGTTG
CCAAAAAAATCACAAGTCTCATAGCTGAAATGATTGCACTTGACCTTCAGCCATATTCCCTTGTAGACAA
CGTTGGCTTTAACAGGCTGCTCGAATACTTGAAACCTCAGTACTCTTTACCCTCCCCTTCCTACTTCTCT
AGAACAGCTATCCCAGGTATGTATGACAATGTGAAACAGATAATTATGTCACATCTGAAGGAAGCTGAGA
GTGGTGTGGTTCACTTCACCTCTGGAATATGGATGAGTAGCCAGACTCGTGAATACCTGACCCTTACAGC
TCACTGGGTCACCTTCGCATCCGCTGTCCGACCACATTGTGAGGACCACCATTGCTCAGCACTTTTAGAT
GTCTCACAAATCGACTGTGACTATAGTGGAAATAGCATTCAGAAGCAGCTGGAGTGTTGGTGGGAAGCCT
GGGTGACTTCCATTGGCCTTCAGATTGGCATCACTGTCACTGACAATCCAAGCATAGGGAAGATGCTGAG
TGAGGGTGAACACTCAAGTGTGCAGTGCTTCAGTCACACAGTGAATCTGATTGTGAGCGAGGCTATCAAG
AGCCAGAGGATGGTGCAGAACTTACTGAGTATTGCCCGGAAGCTGTGTGAGCGGGTCCATCGGTCACCCA
GAGCAAGAGAGAAGTTAGCAGAACTGCAGAAAGAGTACGAGCTGCCACAGCACCAGCTGATCCAGGATGT
ACCGTCTAAGTGGAGCACATCGTTCCACATGCTCGAACGTCTGATTGAGCAGAAGAGGGCAGTTAATGAG
GTATCCATTGAGTGTAACTTCAGAGAATTGATCAGCTGTGACCAGTGGGAGGTCATGCAGTCTGTGTGCC
ATGTGCTGAGACCATTTGATGCTGCAAGCCGAGAGATGAGTGCCCACATGTCTACGCTGAGCCAGGTCAT
CCCCATGATCCACATCCTCAGCAGAAAAGTGGAGATGCTGTTTGGGGAGACCATGGGCATTGACACCATG
CTTAAGTCCCTGAAGGAAGCCATGGCAAGCCGCCTGTCTGCCACACTCCATGACCCCAGGTACATCTTTG
CCACACTGCTGGACCCTCGCTACAAAGCTTCCCTGTTCACAGAGGAGGAGGCAGAGCAGTACAGGCAAGA
CTTAATCAGGGAGCTAGAAATACTGAATTCTACCTCAGAGGACACTGCCACCTCCAATGGCTGTGACTCA
GGGTCCCCACTTAAAGACACTGGCACAGAGGAGAGCCTGTGGTCACTCGCACCGATAAAGAGAGATCAGA
GAGAGAAGCTACCTGAAGACATGGTGCTTGCGTATTTGGAGGAAGAGGTGCTGGAACACAGCTGTGACCC
ACTCACCTACTGGAACCTAAAGCGGTCATCGTGGCCTGGGCTGTCTACCTTAGCAGTTCGATTTCTGGGA
TGTCCCCCAAGTACAGTCCCCTCAGAAAAGCTGTTCAGCACACCCATGGATGCTGGCAGCTTTGGCCAGC
CCAGGCTCATGATGGAGCATTTTGAAAAGCTCATCTTTTTAAAAGTGAATCTTCCTTTAATATGCTTTCA
GTATTGA

Translation (1168 aa):
MEDKQETCPKGDSDFVSDKVNFKTEEDDDQTPCHSLEQVDFKSESEDMRQTDSGDEQADIRAASCACQPS
GKFLAAESEDDYGSLFSQYSSTLYSVAMEAVTQSLLSSRHISSRKKSPAWKHFFISPRDSTKAICTYCMK
EFSRGKNEKDLSTSCLMRHVRRAHPTKLIQENGSLSAGSSFSPPSLLLPPQPADVGDLSTVLSPVRLVQK
MAPKIPSPDQIMEESVTVVSSEELSSDVSVTEKYSREEALAGSSPNLSMLHYDDASETMADRNLSLPKST
SGSRRRSAVWKHFYLSPLDSSKAVCVHCMNEFSRGKNGKDLGTSCLIRHMWRAHRSIVLQENGGNTGIPP
LYPMPPTLLPALLPPEGDLNSASLSPGKQVKESPSASSSPERLPEDLSSHTNPGDVSREDVSMLSSSDDL
GEASVVSSPEKQPADTVNPRFESGTVFQQNKKVMRRLKSEVWHHFSLAPMDSLKAVCRYCSCVISRGKKG
DVGTSCLMRHLYRRHPEVVGNQKDFLGASLANSPYATLASAESSSKLTDLPAVVRKNHQGVFPTNSKKTS
KLWNHFSICSADSTKVVCLHCGRTISRGKKPTNLGTSCLLRHLQRFHGHVLKNDVSEATLSRSPGIRRPL
GIELSGPSSFRDSTEKFYDSHPVAKKITSLIAEMIALDLQPYSLVDNVGFNRLLEYLKPQYSLPSPSYFS
RTAIPGMYDNVKQIIMSHLKEAESGVVHFTSGIWMSSQTREYLTLTAHWVTFASAVRPHCEDHHCSALLD
VSQIDCDYSGNSIQKQLECWWEAWVTSIGLQIGITVTDNPSIGKMLSEGEHSSVQCFSHTVNLIVSEAIK
SQRMVQNLLSIARKLCERVHRSPRAREKLAELQKEYELPQHQLIQDVPSKWSTSFHMLERLIEQKRAVNE
VSIECNFRELISCDQWEVMQSVCHVLRPFDAASREMSAHMSTLSQVIPMIHILSRKVEMLFGETMGIDTM
LKSLKEAMASRLSATLHDPRYIFATLLDPRYKASLFTEEEAEQYRQDLIRELEILNSTSEDTATSNGCDS
GSPLKDTGTEESLWSLAPIKRDQREKLPEDMVLAYLEEEVLEHSCDPLTYWNLKRSSWPGLSTLAVRFLG
CPPSTVPSEKLFSTPMDAGSFGQPRLMMEHFEKLIFLKVNLPLICFQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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