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Report for CCDS31219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31219.1 Public Homo sapiens 10 ASCC1 24 110 108 CCDS HistoryNCBI Gene:51008Re-query CCDS DB by CCDS ID:31219.1Re-query CCDS DB by GeneID:51008See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31219.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317126.8 ENSP00000320461.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317126.8Link to Ensembl Protein Viewer:ENSP00000320461.4Re-query CCDS DB by Nucleotide ID:ENST00000317126Re-query CCDS DB by Protein ID:ENSP00000320461
Original member Current member EBI ENST00000394919.5 ENSP00000378377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394919.5Link to Ensembl Protein Viewer:ENSP00000378377.1Re-query CCDS DB by Nucleotide ID:ENST00000394919Re-query CCDS DB by Protein ID:ENSP00000378377
Original member Current member EBI ENST00000672957.1 ENSP00000500935.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000672957.1Link to Ensembl Protein Viewer:ENSP00000500935.1Re-query CCDS DB by Nucleotide ID:ENST00000672957Re-query CCDS DB by Protein ID:ENSP00000500935
Original member Current member NCBI NM_001198798.2 NP_001185727.1 Accepted alive Link to Nucleotide Sequence:NM_001198798.2Link to Protein Sequence:NP_001185727.1Re-query CCDS DB by Nucleotide ID:NM_001198798Re-query CCDS DB by Protein ID:NP_001185727Link to BLAST:NP_001185727.1
Original member Current member NCBI NM_001198800.3 NP_001185729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001198800.3Link to Protein Sequence:NP_001185729.1Re-query CCDS DB by Nucleotide ID:NM_001198800Re-query CCDS DB by Protein ID:NP_001185729Link to BLAST:NP_001185729.1
Original member Current member NCBI NM_001369093.1 NP_001356022.1 Accepted alive Link to Nucleotide Sequence:NM_001369093.1Link to Protein Sequence:NP_001356022.1Re-query CCDS DB by Nucleotide ID:NM_001369093Re-query CCDS DB by Protein ID:NP_001356022Link to BLAST:NP_001356022.1
Original member Current member NCBI NM_001369094.1 NP_001356023.1 Accepted alive Link to Nucleotide Sequence:NM_001369094.1Link to Protein Sequence:NP_001356023.1Re-query CCDS DB by Nucleotide ID:NM_001369094Re-query CCDS DB by Protein ID:NP_001356023Link to BLAST:NP_001356023.1
Original member Current member NCBI NM_001369095.1 NP_001356024.1 Accepted alive Link to Nucleotide Sequence:NM_001369095.1Link to Protein Sequence:NP_001356024.1Re-query CCDS DB by Nucleotide ID:NM_001369095Re-query CCDS DB by Protein ID:NP_001356024Link to BLAST:NP_001356024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185727.1 357 Q8N9N2-2 357 100% 0 0
NP_001185729.1 357 Q8N9N2-2 357 100% 0 0
NP_001356022.1 357 Q8N9N2-2 357 100% 0 0
NP_001356023.1 357 Q8N9N2-2 357 100% 0 0
NP_001356024.1 357 Q8N9N2-2 357 100% 0 0

Chromosomal Locations for CCDS 31219.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 72097334 72097450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72128082 72128167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72133057 72133181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72152869 72152988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72161538 72161674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72196811 72196989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72203427 72203524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72210732 72210831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 72213187 72213298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGAAGTTCTGCGTCCACAGCTTATAAGAATTGATGGCCGGAATTACAGGAAGAATCCAGTCCAAGAAC
AGACCTATCAACATGAAGAAGATGAAGAGGACTTCTATCAAGGCTCCATGGAGTGTGCTGATGAGCCCTG
TGATGCCTACGAGGTGGAGCAGACCCCACAAGGATTCCGGTCTACTTTGAGGGCCCCCAGCTTGCTCTAT
AAGCATATAGTTGGAAAGAGAGGGGACACTAGGAAGAAAATAGAAATGGAGACCAAAACTTCTATTAGCA
TTCCTAAACCTGGACAAGACGGGGAAATTGTAATCACTGGCCAGCATCGAAATGGTGTAATTTCAGCCCG
AACACGGATTGATGTTCTTTTGGACACTTTTCGAAGAAAGCAGCCCTTCACTCACTTCCTTGCCTTTTTC
CTCAATGAAGTTGAGGTTCAGGAAGGATTCCTGAGATTCCAGGAGGAAGTACTGGCGAAGTGCTCCATGG
ATCATGGGGTTGACAGCAGCATTTTCCAGAATCCTAAAAAGCTTCATCTAACTATTGGGATGTTGGTGCT
TTTGAGTGAGGAAGAGATCCAGCAGACATGTGAGATGCTACAGCAGTGTAAAGAGGAATTCATTAATGAT
ATTTCTGGGGGTAAACCCCTAGAAGTGGAGATGGCAGGGATAGAATACATGAATGATGATCCTGGCATGG
TGGATGTTCTTTACGCCAAAGTCCATATGAAAGATGGCTCCAACAGGCTACAAGAATTAGTTGATCGAGT
GCTGGAACGTTTTCAGGCATCTGGACTAATAGTGAAAGAGTGGAATAGTGTGAAACTGCATGCTACAGTT
ATGAATACACTATTCAGGAAAGACCCCAATGCTGAAGGCAGGTACAATCTCTACACAGCGGAAGGCAAAT
ATATCTTCAAGGAAAGAGAATCATTTGATGGCCGAAATATTTTAAAGTTGTTTGAGAACTTCTACTTTGG
CTCCCTAAAGCTGAATTCAATTCACATCTCTCAGAGGTTCACCGTAGACAGCTTTGGAAACTACGCTTCC
TGTGGACAAATTGACTTCTCCTGA

Translation (357 aa):
MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLY
KHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFF
LNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFIND
ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATV
MNTLFRKDPNAEGRYNLYTAEGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYAS
CGQIDFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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