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Report for CCDS38046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38046.1 Public Mus musculus 2 Sfmbt2 23 108 98 CCDS HistoryNCBI Gene:353282Re-query CCDS DB by CCDS ID:38046.1Re-query CCDS DB by GeneID:353282See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116594.8 ENSMUSP00000112293.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116594.8Link to Ensembl Protein Viewer:ENSMUSP00000112293.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116594Re-query CCDS DB by Protein ID:ENSMUSP00000112293
Original member Current member NCBI NM_001369078.1 NP_001356007.1 Accepted alive Link to Nucleotide Sequence:NM_001369078.1Link to Protein Sequence:NP_001356007.1Re-query CCDS DB by Nucleotide ID:NM_001369078Re-query CCDS DB by Protein ID:NP_001356007Link to BLAST:NP_001356007.1
Original member Current member NCBI NM_177386.5 NP_796360.2 Accepted alive Link to Nucleotide Sequence:NM_177386.5Link to Protein Sequence:NP_796360.2Re-query CCDS DB by Nucleotide ID:NM_177386Re-query CCDS DB by Protein ID:NP_796360Link to BLAST:NP_796360.2

Chromosomal Locations for CCDS 38046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10393310 10393406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10401989 10402083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10404438 10404678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10437947 10438035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10439867 10440113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10445685 10445782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10456905 10457006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10461325 10461472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10523945 10524027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10530491 10530614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10542933 10543046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10547431 10547473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10556219 10556292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10557568 10557710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10568361 10568470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10575336 10575511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10577815 10578131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10579135 10579392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10580544 10580672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10590430 10590570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2829 nt):
ATGGAGAGATATTTGCCAGTTTCGAAGAAGCGCAACTCATCCTCCTCTTTGGAAAAGATAACCGGCTCAG
CAAATGGGAATGGGACTCTTTACTCAGAGGAAGATACCAACCTGGAGGAAAATGACTTCAGCTGGGGAGA
CTATTTGGAAGAGACAGGTACCAGAGCGGTGCCACACGTGTCCTTCAGACATGTGGAGATCAGCATTCGG
AGTAACTTCCAGCCAGGAATGAAGTTGGAGGTGGCCAACAAGAACAATCCAGACACTTACTGGGTGGCCA
CAATCATCACCACCTGTGGACAGCTGCTGCTCCTGCGTTACTGTGGTTACGGGGAAGACCGAAGGGCTGA
CTTCTGGTGTGACGTGATCATAGCGGATCTGCACCCTGTGGGGTGGTGCACGCAGAACAACAAGGTGTTG
AGGCCTCCGGATGCTATCAAAGACAAGTACTCAGACTGGACAGACTTCCTCATCCGTGAATTGACTGGTT
CTCGGACAGCCCCTGCAAACCTTCTGGAAGGTCCTCTGCGAGGGAAAGGCCCTATAGACCTCATTACAGT
TGATTCCTTAATAGAGCTGCAGGACTCCCAGAATCCCTTTCAGTACTGGATAGTTAGTGTGACTGAGAAT
GTCGGTGGAAGATTACGCCTTCGCTATGTGGGACTGGAGCACACCGAATCCTATGACCGGTGGTTATTTT
ACTTGGATTACAGACTTCGACCAATTGGTTGGTGTCAAGAAAATAAATACAGAATGGATCCACCTTCAGA
ACTTTATTATCTGAAGTTGCCTTTCGAGTGGAAATGTGCTCTGGAAAAAGCCCTAGTTCTTGCTGCAGAG
TCTCCTCTTCCAATGGAAGTATTTAAGGACCATGCAGACTTGCAAAGCCATTTCTTTACAGTTGGGATGC
GGCTGGAGACATTGCATATAAGCGATCCTTTTCATATCTACCCTGCATCAGTGACCAAGGTTTTTAATAG
TAAATTTTTCCAAGTGGCCATTGATGACCTAAGACCTGAAGCTGATAAACCCACGATGCTGTGCCATGCA
GATTCTTTGGGGATTTTGCCAGTACAGTGGTGCCTTAAAAACGGAGTCAACCTCGCTCCTCCCAAAGGTT
ACTCAGGCCAGGATTTTAACTGGGTGGATTACCACAAGCAGCGTCAGGCAGAAGAAGCACCTCATTTCTG
CTTCAAAAATGCATTTTCTCGGGGCTTCTCAAAGAACATGAAGCTTGAAGCTGTGAACCCTGTGAATCCA
GGAGAGGTGTGCGTGGCCACTGTGGTCAGTGTGAAAGGGCGGTTGTTATGGCTCCATTTAGAAGGTCTGG
AGACCCCAATGCCAGATATCATCGTGGACATGGACTCCATGGATATCTTCCCTGTGGGCTGGTGTGAGGC
CAATTCTTACCCTCTGACCACACCATATAAAGCATCCTCCAAAAGCAAGAGAAAGACTGTCCATTTCAAG
ATGGAAAAACAATTATTATCCCCAGTGCCTATTGAGAAAATACCTCATGAGCTTTGCTTGCTGCCGCCGC
AGATGGACAGTCCAGTCGGAGCCATCAATGCCAAGTACTGCTGCCCACAGCTGTTCGTCAACCACCGGTG
TTTCTCAGGCCCATTCCTGAACAAAGGAAGGATTTCAGAGCTACCTCAGTCAGTGGGGCCTGGCATGTGT
GTGCTGGTGCTCAAAGAGATTCTTACCCTCATTACCAATGCAGCCTACAAGCCCGGGAGGGTCCTGAGAG
AATTACAGCTGGTGGAAGACCCAGAGTGGAACTCCCAGGAGGAGATTCTCAAGGCAAAATACGGGGGCAA
AACATACAGGGCCGTGGTCAAGATCGTGCGAACAGCAGACCAAGTGATGAATTTCTGCCGGCAAGTTTGT
GCCAAGCTGGAGTGCTGTCCAAATTTACTGAGCCCTGTGTTGATCTCTGAAACCTGCCCAGAGAACTGTT
CCGTCCACACCAAAACCAGATACACCTATTATTATGGAAAAAGAAGAAGGGTCATTCAGTCGTCACTTAG
AGTCAGCAACATCGAAACTCCACCAAAATCAACCAGGAGAAGGAAACGACGGAAATCAGTCTATGTACAG
AAGAGACGGAAATCTGCTATAGTCGTCCCAGCAGGTGTTCCAGCAGGCGTCCCAGCAGGTGTCCCAGAGG
ACATCCCAGCGGGCATCCCAGAGGGCATCCCAGCAAGCATCCCAGAGAGCATCCCAGAGGGCATCCCAGA
GAGCCTCCCAGAGAGCCTCCCAGAGGCCATCCCAGAGAGCATCCCAAAGGGCTCAGCACAGAAAACTGAA
CAGGAGAAGCGAGAAACTCTGGACACTGCAAGGAAGAAAACTGGGTACCATGGTCCGGCTTACCAGACAG
ACACCTCAGCAGCACAGGTGCCCTTTGCCCGGCCACGAAGGGCTGTAACCCTGAGGAGAAATTCCGAGGC
TTTGAAGCGACCTCCAGTGGAAAGGGCACGGAGGGTCCGCACAGTGCCAACTACTGCTTCTTCTAATAAC
AGAGTCAAGGGTCCACTTGTTAGAATTGTGAAACCAGAGGATTCGAGCCAATCGGATGAGGAGAAACTGA
TACTTGAGAGCAATCCCCTGGAGTGGTCGGTGACGGATGTGGTACGATTCATTAAGCTGACTGACTGTGC
ACCTTTGGCCAGGATCTTCCAGGAGCAGGACATCGACGGCCAGGCACTCCTCCTGCTGACTCTCCCGACA
GTGCAGGAGTGCATGGAGCTGAAACTGGGACCCGCTATCAAGTTATGCCATCAGATCGAGAGAGTGAAGG
TGGCTTTCTATGCCCAGTACGCCAGCTAA

Translation (942 aa):
MERYLPVSKKRNSSSSLEKITGSANGNGTLYSEEDTNLEENDFSWGDYLEETGTRAVPHVSFRHVEISIR
SNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVIIADLHPVGWCTQNNKVL
RPPDAIKDKYSDWTDFLIRELTGSRTAPANLLEGPLRGKGPIDLITVDSLIELQDSQNPFQYWIVSVTEN
VGGRLRLRYVGLEHTESYDRWLFYLDYRLRPIGWCQENKYRMDPPSELYYLKLPFEWKCALEKALVLAAE
SPLPMEVFKDHADLQSHFFTVGMRLETLHISDPFHIYPASVTKVFNSKFFQVAIDDLRPEADKPTMLCHA
DSLGILPVQWCLKNGVNLAPPKGYSGQDFNWVDYHKQRQAEEAPHFCFKNAFSRGFSKNMKLEAVNPVNP
GEVCVATVVSVKGRLLWLHLEGLETPMPDIIVDMDSMDIFPVGWCEANSYPLTTPYKASSKSKRKTVHFK
MEKQLLSPVPIEKIPHELCLLPPQMDSPVGAINAKYCCPQLFVNHRCFSGPFLNKGRISELPQSVGPGMC
VLVLKEILTLITNAAYKPGRVLRELQLVEDPEWNSQEEILKAKYGGKTYRAVVKIVRTADQVMNFCRQVC
AKLECCPNLLSPVLISETCPENCSVHTKTRYTYYYGKRRRVIQSSLRVSNIETPPKSTRRRKRRKSVYVQ
KRRKSAIVVPAGVPAGVPAGVPEDIPAGIPEGIPASIPESIPEGIPESLPESLPEAIPESIPKGSAQKTE
QEKRETLDTARKKTGYHGPAYQTDTSAAQVPFARPRRAVTLRRNSEALKRPPVERARRVRTVPTTASSNN
RVKGPLVRIVKPEDSSQSDEEKLILESNPLEWSVTDVVRFIKLTDCAPLARIFQEQDIDGQALLLLTLPT
VQECMELKLGPAIKLCHQIERVKVAFYAQYAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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