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Report for CCDS85272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85272.1 Public Mus musculus 7 AI987944 23 108 98 CCDS HistoryNCBI Gene:233168Re-query CCDS DB by CCDS ID:85272.1Re-query CCDS DB by GeneID:233168See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205338.1 ENSMUSP00000145621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205338.1Link to Ensembl Protein Viewer:ENSMUSP00000145621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205338Re-query CCDS DB by Protein ID:ENSMUSP00000145621
Original member NCBI NM_001199330.1 NP_001186259.1 Updated not alive Link to Nucleotide Sequence:NM_001199330.1Link to Protein Sequence:NP_001186259.1Re-query CCDS DB by Nucleotide ID:NM_001199330Re-query CCDS DB by Protein ID:NP_001186259
Current member NCBI NM_001199330.2 NP_001186259.1 Accepted alive Link to Nucleotide Sequence:NM_001199330.2Link to Protein Sequence:NP_001186259.1Re-query CCDS DB by Nucleotide ID:NM_001199330Re-query CCDS DB by Protein ID:NP_001186259Link to BLAST:NP_001186259.1

Chromosomal Locations for CCDS 85272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41374342 41375374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41376491 41376548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41376746 41376866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGACCTATGATGATGTCCATGTAAACTTCACTGAAGAAGAGTGGGCTTTGCTCAGTCCTTCCCAGAAGA
GGCTCTACAAGGATGTGATGCTGGAAACCTACAAGAACCTCACTGCTATAGGTTACAATTGGGAAGACCA
TAATAGTGAACATTTTCAACATTCTAGAAGACATGGAAGGCATGAAAGAAGTCATACTGGAGAAAAACCT
TCTGTATATACTCAGTGTGGTAAAGTCTTTGCATATCGCAGTCATCCTCAGAATCATGATAGAATGCATA
CAGGAGAGAAAAGCCATGAAGGTATTCAACATGGTAAAGCCTTTGCACATCAAAGTCACCTTCAAAGGCA
TGAAAGAATTCATACCAGCAAGAAACCTTATGAATGTAATCAGTGTGGTAAGGCCTTTGCACATCGTAGT
TACCTTCGAAAGCATAAAAGAATTCATATTGAAGAGAAGCCCGATGAATGGAACCAATGTGGTCAAGGTA
ATCTCCAAATACATAAAAGGACACATTCTGCACAGAAACCCTATGAATGTAATCAGTGTGGAAAAGCCTT
CAGGCGGCACAATAGTCTCCAAGTACATAATAGAACACATACTGGAGAGAAACCCTACAAATGTGATCAA
TGTGATAAAGCCTTTACACAACAAGGTCATCTCCGAATTCATAATAGAACACATACTGGAGAGAAACCCT
ATGAATGCAATCAATGTGGTAAAGCCTTTGCAGTTCACAGTACTCTCCAAATACATAAAAGGACACATAC
TGCAGAGACACCCTATGAATGTAATCAGTGTGGTAAAGCCTTTAGGCGGCACAATACCCTCCAAATACAT
AAAAGAACACACACTGGAGAAAAACCATACAAATGCGATCAATGTGATAAAGCCTTTTCACAACAAGGTC
ACCTCAGAATACATAAAAGAACACATACTGGAGAGAAACCTTATAAATGTAGTCAGTGTGGTAAAGCTTT
TGCACGCCATAGTCATCTTCTAATTCATGAAAGAATTCATACTGGAGAGAAACCTTACAGATGTAATCAA
TGTAATAAAGCCTTTTCACAATATGGTGGTCTTCAAATACATAAAAGCACACATACTGCTGAGAAGCCCT
ATGAATGTAATGAATGTGGTAAAACTTTTTCACAACACAGTTATCTCCGAACACATAAAAGAACACATAC
TAGAGAGAAACCCTATAAATAA

Translation (403 aa):
MTYDDVHVNFTEEEWALLSPSQKRLYKDVMLETYKNLTAIGYNWEDHNSEHFQHSRRHGRHERSHTGEKP
SVYTQCGKVFAYRSHPQNHDRMHTGEKSHEGIQHGKAFAHQSHLQRHERIHTSKKPYECNQCGKAFAHRS
YLRKHKRIHIEEKPDEWNQCGQGNLQIHKRTHSAQKPYECNQCGKAFRRHNSLQVHNRTHTGEKPYKCDQ
CDKAFTQQGHLRIHNRTHTGEKPYECNQCGKAFAVHSTLQIHKRTHTAETPYECNQCGKAFRRHNTLQIH
KRTHTGEKPYKCDQCDKAFSQQGHLRIHKRTHTGEKPYKCSQCGKAFARHSHLLIHERIHTGEKPYRCNQ
CNKAFSQYGGLQIHKSTHTAEKPYECNECGKTFSQHSYLRTHKRTHTREKPYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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