NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
407.1 Public Homo sapiens 1 STK40 24 110 108 CCDS HistoryNCBI Gene:83931Re-query CCDS DB by CCDS ID:407.1Re-query CCDS DB by GeneID:83931See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 407.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373129.7 ENSP00000362221.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373129.7Link to Ensembl Protein Viewer:ENSP00000362221.3Re-query CCDS DB by Nucleotide ID:ENST00000373129Re-query CCDS DB by Protein ID:ENSP00000362221
Original member Current member EBI ENST00000373132.4 ENSP00000362224.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373132.4Link to Ensembl Protein Viewer:ENSP00000362224.4Re-query CCDS DB by Nucleotide ID:ENST00000373132Re-query CCDS DB by Protein ID:ENSP00000362224
Original member Current member NCBI NM_001282547.2 NP_001269476.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282547.2Link to Protein Sequence:NP_001269476.1Re-query CCDS DB by Nucleotide ID:NM_001282547Re-query CCDS DB by Protein ID:NP_001269476Link to BLAST:NP_001269476.1
Original member Current member NCBI NM_032017.3 NP_114406.1 Accepted alive Link to Nucleotide Sequence:NM_032017.3Link to Protein Sequence:NP_114406.1Re-query CCDS DB by Nucleotide ID:NM_032017Re-query CCDS DB by Protein ID:NP_114406Link to BLAST:NP_114406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269476.1 435 Q8N2I9-1 435 100% 0 0
NP_114406.1 435 Q8N2I9-1 435 100% 0 0

Chromosomal Locations for CCDS 407.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36341755 36341973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36343364 36343448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36343860 36343979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36344120 36344264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36348700 36348815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36354364 36354416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36355206 36355433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36358239 36358382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36358737 36358822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36361221 36361332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGAAGCGGAGAGCATCAGACAGAGGAGCTGGGGAAACGTCGGCCAGGGCCAAGGCTCTAGGAAGTGGGA
TTTCTGGAAATAATGCAAAGAGAGCTGGACCATTCATCCTTGGTCCCCGTCTGGGCAACTCACCGGTGCC
AAGCATAGTGCAGTGTTTGGCGAGGAAAGATGGCACGGATGACTTCTATCAGCTGAAGATCCTGACCCTG
GAGGAGAGGGGGGACCAAGGCATAGAGAGCCAGGAAGAGCGGCAGGGCAAGATGCTGCTGCACACCGAGT
ACTCACTGCTGTCTCTCCTGCACACGCAGGATGGCGTGGTGCACCACCACGGCCTCTTCCAGGACCGCAC
CTGTGAAATCGTTGAGGACACAGAATCCAGCCGGATGGTTAAGAAGATGAAGAAGCGCATCTGCCTCGTC
CTGGACTGCCTCTGTGCTCATGACTTCAGCGATAAGACCGCTGACCTCATCAACCTGCAGCACTACGTCA
TCAAGGAGAAGAGGCTCAGCGAGAGGGAGACTGTGGTAATCTTCTACGACGTGGTCCGCGTGGTGGAGGC
CCTGCACCAGAAAAATATCGTGCACAGAGACCTGAAGCTGGGGAACATGGTGCTCAACAAGAGGACACAT
CGGATAACCATCACCAACTTCTGCCTCGGGAAGCATCTGGTGAGCGAGGGGGACCTGCTGAAGGACCAGA
GAGGGAGCCCTGCCTACATCAGTCCCGACGTGCTCAGCGGCCGGCCGTACCGTGGCAAGCCCAGTGACAT
GTGGGCCCTGGGCGTGGTGCTCTTCACCATGCTGTATGGCCAGTTCCCCTTCTACGACAGCATCCCGCAG
GAGCTCTTCCGCAAGATCAAGGCTGCCGAGTATACCATTCCTGAGGATGGACGGGTTTCTGAGAACACCG
TGTGTCTCATCCGGAAGCTGCTGGTCCTTGACCCCCAGCAGCGCCTGGCCGCCGCCGACGTCCTGGAGGC
CCTCAGTGCCATCATTGCATCATGGCAGTCCCTGTCATCTCTGAGTGGGCCTTTGCAAGTGGTTCCTGAC
ATTGATGACCAAATGAGCAATGCGGATAGCTCCCAGGAGGCGAAGGTGACGGAGGAGTGCTCCCAGTACG
AGTTTGAGAACTACATGCGTCAGCAGCTGCTGCTGGCCGAGGAGAAGAGCTCCATCCATGACGCCCGGAG
CTGGGTACCCAAGCGGCAGTTCGGCAGCGCACCACCGGTGCGACGGCTGGGCCACGACGCACAGCCCATG
ACCTCCTTGGACACGGCCATCCTGGCGCAGCGCTACCTGCGGAAATAA

Translation (435 aa):
MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTL
EERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVKKMKKRICLV
LDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTH
RITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQ
ELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPD
IDDQMSNADSSQEAKVTEECSQYEFENYMRQQLLLAEEKSSIHDARSWVPKRQFGSAPPVRRLGHDAQPM
TSLDTAILAQRYLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH