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Report for CCDS17414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17414.1 Public Mus musculus 3 Pdcd10 23 108 98 CCDS HistoryNCBI Gene:56426Re-query CCDS DB by CCDS ID:17414.1Re-query CCDS DB by GeneID:56426See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161137.7 ENSMUSP00000125752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161137.7Link to Ensembl Protein Viewer:ENSMUSP00000125752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161137Re-query CCDS DB by Protein ID:ENSMUSP00000125752
Original member Current member NCBI NM_019745.4 NP_062719.2 Accepted alive Link to Nucleotide Sequence:NM_019745.4Link to Protein Sequence:NP_062719.2Re-query CCDS DB by Nucleotide ID:NM_019745Re-query CCDS DB by Protein ID:NP_062719Link to BLAST:NP_062719.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062719.2 212 Q8VE70 212 100% 0 0

Chromosomal Locations for CCDS 17414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 75517520 75517601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75520702 75520784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75521031 75521109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75527588 75527714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75528810 75528927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75533541 75533594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75541160 75541255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAGGATGACAATGGAAGAGATGAAGAATGAAGCTGAGACCACTTCCATGGTTTCTATGCCTCTCTATG
CAGTCATGTATCCTGTGTTTAATGAGCTAGAACGAGTAAATTTGTCTGCAGCTCAGACTCTGAGAGCCGC
TTTCATTAAGGCTGAAAAGGAAAATCCAGGCCTCACACAAGACATCATTATGAAAATATTAGAGAAAAAA
AGTGTAGAAGTTAACTTCACCGAGTCCCTCCTTCGTATGGCAGCTGATGACGTAGAAGAGTACATGATTG
AGCGGCCAGAGCCAGAATTCCAGGACCTAAATGAAAAGGCACGGGCACTTAAACAGATTCTCAGTAAGAT
TCCTGATGAGATCAATGACAGAGTGAGGTTTCTGCAGACAATCAAGGATATAGCTAGTGCAATAAAAGAA
CTACTTGATACAGTGAATAATGTCTTCAAAAAATATCAGTACCAGAACCGCAGGGCACTTGAACACCAAA
AGAAAGAATTTGTAAAATACTCCAAAAGTTTCAGTGACACTCTGAAGACTTATTTTAAAGATGGCAAGGC
AATAAATGTGTTCATAAGTGCCAACCGGCTAATTCATCAAACCAACTTGATACTTCAGACCTTCAAAACT
GTGGCCTGA

Translation (212 aa):
MRMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKK
SVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKE
LLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKT
VA


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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