NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36693.1 Public Mus musculus 13 Tpbpa 23 108 98 CCDS HistoryNCBI Gene:21984Re-query CCDS DB by CCDS ID:36693.1Re-query CCDS DB by GeneID:21984See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021885.7 ENSMUSP00000021885.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021885.7Link to Ensembl Protein Viewer:ENSMUSP00000021885.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021885Re-query CCDS DB by Protein ID:ENSMUSP00000021885
Original member Current member NCBI NM_009411.5 NP_033437.2 Accepted alive Link to Nucleotide Sequence:NM_009411.5Link to Protein Sequence:NP_033437.2Re-query CCDS DB by Nucleotide ID:NM_009411Re-query CCDS DB by Protein ID:NP_033437Link to BLAST:NP_033437.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033437.2 124 P13438 124 99.1936% 0 1

Chromosomal Locations for CCDS 36693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 60939606 60939614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60939910 60940053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60940149 60940271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60940590 60940688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGACTCCTACAATCTTCCTAGTCATCCTATGCCTGGGAGTGGCCTCAGCTGCTATAGTCCCTGAAGCGC
AGTTGGATGCTGAACTGCAAGAGCAGAAGGATAAAGAAGTTCTCATAAAAGCAGTGTGGAGTAAGTTTAT
GAAGACTAACAAACTTCACAGTAGCGAAAATGACCAGGAGACGGAAGGCTCCAACATAGAAATGAGTGCC
TCCGGTCAGCTAACTGATGAAGAACTCATGAAAATAATGACTACTGTTTTACACCCAATGTTTGAAGAGG
AGGAAAACAAACCACAGCCAGTTGTTGATGACCCTGAATTTGAGGATTACACAGAGAGTGGCGATGGGTT
TTTTGTACCAAATCAGCCACAGTAA

Translation (124 aa):
MTPTIFLVILCLGVASAAIVPEAQLDAELQEQKDKEVLIKAVWSKFMKTNKLHSSENDQETEGSNIEMSA
SGQLTDEELMKIMTTVLHPMFEEEENKPQPVVDDPEFEDYTESGDGFFVPNQPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH