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Report for CCDS57270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57270.1 Public Mus musculus 4 Ccl27al 23 108 98 CCDS HistoryNCBI Gene:100039863Re-query CCDS DB by CCDS ID:57270.1Re-query CCDS DB by GeneID:100039863See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108018.8 ENSMUSP00000103653.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108018.8Link to Ensembl Protein Viewer:ENSMUSP00000103653.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108018Re-query CCDS DB by Protein ID:ENSMUSP00000103653
Original member Current member NCBI NM_001199962.1 NP_001186891.1 Accepted alive Link to Nucleotide Sequence:NM_001199962.1Link to Protein Sequence:NP_001186891.1Re-query CCDS DB by Nucleotide ID:NM_001199962Re-query CCDS DB by Protein ID:NP_001186891Link to BLAST:NP_001186891.1

Chromosomal Locations for CCDS 57270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42154157 42154176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42157046 42157143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42158340 42158472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42158662 42158818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGTGGCGCAGGGAGCGGAGTCCGATGTCTCCAACAAGCCAGAGACTAAGTCTGGAAGCCCCCAGCCTCC
CACTGAGAAGCTGGCATCCGTGGAACAAGACTAAGCAGAAGCAAGAAGCCTTGCCTCTGCCCTCCAGCAC
TAGCTGCTGTACTCAGCTCTATAGACAGCCACTCCCAAGCAGGCTGCTGAGGAGGATTGTCCACATGGAA
CTGCAGGAGGCTGATGGGGACTGTCACCTCCAGGCTGTCGTGCTTCACCTGGCTCGGCGCAGTGTCTGTG
TTCATCCCCAGAACCGCAGCCTGGCTCGGTGGTTAGAACGCCAAGGGAAAAGGCTCCAAGGAACTGTACC
CAGTTTAAATCTGGTACTACAAAAGAAAATGTACTCACACCCCCAACAGCAAAACTAA

Translation (135 aa):
MWRRERSPMSPTSQRLSLEAPSLPLRSWHPWNKTKQKQEALPLPSSTSCCTQLYRQPLPSRLLRRIVHME
LQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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