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Report for CCDS12677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12677.1 Public Homo sapiens 19 FOXA3 24 110 108 CCDS HistoryNCBI Gene:3171Re-query CCDS DB by CCDS ID:12677.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302177.3 ENSP00000304004.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302177.3Link to Ensembl Protein Viewer:ENSP00000304004.1Re-query CCDS DB by Nucleotide ID:ENST00000302177Re-query CCDS DB by Protein ID:ENSP00000304004
Original member Current member NCBI NM_004497.3 NP_004488.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004497.3Link to Protein Sequence:NP_004488.2Re-query CCDS DB by Nucleotide ID:NM_004497Re-query CCDS DB by Protein ID:NP_004488Link to BLAST:NP_004488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004488.2 350 P55318 350 100% 0 0

Chromosomal Locations for CCDS 12677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45864457 45864525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45872075 45873058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGCTGGGCTCAGTGAAGATGGAGGCCCATGACCTGGCCGAGTGGAGCTACTACCCGGAGGCGGGCGAGG
TCTACTCGCCGGTGACCCCAGTGCCCACCATGGCCCCCCTCAACTCCTACATGACCCTGAATCCTCTAAG
CTCTCCCTATCCCCCTGGGGGGCTCCCTGCCTCCCCACTGCCCTCAGGACCCCTGGCACCCCCAGCACCT
GCAGCCCCCCTGGGGCCCACTTTCCCAGGCCTGGGTGTCAGCGGTGGCAGCAGCAGCTCCGGGTACGGGG
CCCCGGGTCCTGGGCTGGTGCACGGGAAGGAGATGCCGAAGGGGTATCGGCGGCCCCTGGCACACGCCAA
GCCACCGTATTCCTATATCTCACTCATCACCATGGCCATCCAGCAGGCGCCGGGCAAGATGCTGACCTTG
AGTGAAATCTACCAGTGGATCATGGACCTCTTCCCTTACTACCGGGAGAATCAGCAGCGCTGGCAGAACT
CCATTCGCCACTCGCTGTCTTTCAACGACTGCTTCGTCAAGGTGGCGCGTTCCCCAGACAAGCCTGGCAA
GGGCTCCTACTGGGCCCTACACCCCAGCTCAGGGAACATGTTTGAGAATGGCTGCTACCTGCGCCGCCAG
AAACGCTTCAAGCTGGAGGAGAAGGTGAAAAAAGGGGGCAGCGGGGCTGCCACCACCACCAGGAACGGGA
CAGGGTCTGCTGCCTCGACCACCACCCCCGCGGCCACAGTCACCTCCCCGCCCCAGCCCCCGCCTCCAGC
CCCTGAGCCTGAGGCCCAGGGCGGGGAAGATGTGGGGGCTCTGGACTGTGGCTCACCCGCTTCCTCCACA
CCCTATTTCACTGGCCTGGAGCTCCCAGGGGAGCTGAAGCTGGACGCGCCCTACAACTTCAACCACCCTT
TCTCCATCAACAACCTAATGTCAGAACAGACACCAGCACCTCCCAAACTGGACGTGGGGTTTGGGGGCTA
CGGGGCTGAAGGTGGGGAGCCTGGAGTCTACTACCAGGGCCTCTATTCCCGCTCTTTGCTTAATGCATCC
TAG

Translation (350 aa):
MLGSVKMEAHDLAEWSYYPEAGEVYSPVTPVPTMAPLNSYMTLNPLSSPYPPGGLPASPLPSGPLAPPAP
AAPLGPTFPGLGVSGGSSSSGYGAPGPGLVHGKEMPKGYRRPLAHAKPPYSYISLITMAIQQAPGKMLTL
SEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQ
KRFKLEEKVKKGGSGAATTTRNGTGSAASTTTPAATVTSPPQPPPPAPEPEAQGGEDVGALDCGSPASST
PYFTGLELPGELKLDAPYNFNHPFSINNLMSEQTPAPPKLDVGFGGYGAEGGEPGVYYQGLYSRSLLNAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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