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Report for CCDS3283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3283.1 Public Homo sapiens 3 RFC4 24 110 108 CCDS HistoryNCBI Gene:5984Re-query CCDS DB by CCDS ID:3283.1Re-query CCDS DB by GeneID:5984See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3283.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296273.7 ENSP00000296273.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296273.7Link to Ensembl Protein Viewer:ENSP00000296273.2Re-query CCDS DB by Nucleotide ID:ENST00000296273Re-query CCDS DB by Protein ID:ENSP00000296273
Original member Current member EBI ENST00000392481.6 ENSP00000376272.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392481.6Link to Ensembl Protein Viewer:ENSP00000376272.2Re-query CCDS DB by Nucleotide ID:ENST00000392481Re-query CCDS DB by Protein ID:ENSP00000376272
Original member Current member NCBI NM_002916.5 NP_002907.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002916.5Link to Protein Sequence:NP_002907.1Re-query CCDS DB by Nucleotide ID:NM_002916Re-query CCDS DB by Protein ID:NP_002907Link to BLAST:NP_002907.1
Original member Current member NCBI NM_181573.3 NP_853551.1 Accepted alive Link to Nucleotide Sequence:NM_181573.3Link to Protein Sequence:NP_853551.1Re-query CCDS DB by Nucleotide ID:NM_181573Re-query CCDS DB by Protein ID:NP_853551Link to BLAST:NP_853551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002907.1 363 P35249-1 363 100% 0 0
NP_853551.1 363 P35249-1 363 100% 0 0

Chromosomal Locations for CCDS 3283.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186789969 186790064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186790142 186790255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186790326 186790406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186791725 186791850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186792490 186792610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186792804 186792947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186794658 186794777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186797535 186797614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186801117 186801195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186804583 186804713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGCAAGCATTTCTTAAAGGTACATCCATCAGTACTAAACCCCCGCTGACCAAGGATCGAGGAGTAGCTG
CCAGTGCGGGAAGTAGCGGAGAGAACAAGAAAGCCAAACCCGTTCCCTGGGTGGAAAAATATCGCCCAAA
ATGTGTGGATGAAGTTGCTTTCCAGGAAGAAGTGGTTGCAGTGCTGAAAAAATCTTTAGAAGGAGCAGAT
CTTCCTAATCTCTTGTTTTACGGACCACCTGGAACTGGAAAAACATCCACTATTTTGGCAGCAGCTAGAG
AACTCTTTGGGCCTGAACTTTTCCGATTAAGAGTTCTTGAGTTAAATGCATCTGATGAACGTGGAATACA
AGTAGTTCGAGAGAAAGTGAAAAATTTTGCTCAATTAACTGTGTCAGGAAGTCGCTCAGATGGGAAGCCG
TGTCCGCCTTTTAAGATTGTGATTCTGGATGAAGCAGATTCTATGACCTCAGCTGCTCAGGCAGCTTTAA
GACGTACCATGGAGAAGGAGTCGAAAACCACCCGATTCTGTCTTATCTGTAACTATGTCAGTCGAATAAT
TGAACCCCTGACCTCTAGATGTTCAAAATTCCGCTTCAAGCCTCTGTCAGATAAAATTCAACAGCAGCGA
TTACTAGACATTGCCAAGAAGGAAAATGTCAAAATTAGTGATGAGGGAATAGCTTATCTTGTTAAAGTGT
CAGAAGGAGACTTAAGAAAAGCCATTACATTTCTTCAAAGCGCTACTCGATTAACAGGTGGAAAGGAGAT
CACAGAGAAAGTGATTACAGACATTGCCGGGGTAATACCAGCTGAGAAAATTGATGGAGTATTTGCTGCC
TGTCAGAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTCAAGGATTTAATAGATGAGGGTCATGCAGCAA
CTCAGCTCGTCAATCAACTCCATGATGTGGTTGTAGAAAATAACTTATCTGATAAACAGAAGTCTATTAT
CACAGAAAAACTTGCCGAAGTTGACAAATGCCTAGCAGATGGTGCTGATGAACATTTGCAACTCATCAGC
CTTTGTGCAACTGTGATGCAGCAGTTATCTCAGAATTGTTAA

Translation (363 aa):
MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD
LPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKP
CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQR
LLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAA
CQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLIS
LCATVMQQLSQNC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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