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Report for CCDS38249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38249.1 Public Mus musculus 2 Ankef1 23 108 98 CCDS HistoryNCBI Gene:319196Re-query CCDS DB by CCDS ID:38249.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028726.8 ENSMUSP00000028726.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028726.8Link to Ensembl Protein Viewer:ENSMUSP00000028726.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028726Re-query CCDS DB by Protein ID:ENSMUSP00000028726
Original member Current member EBI ENSMUST00000121717.1 ENSMUSP00000113881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121717.1Link to Ensembl Protein Viewer:ENSMUSP00000113881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121717Re-query CCDS DB by Protein ID:ENSMUSP00000113881
Original member Current member EBI ENSMUST00000180246.7 ENSMUSP00000135947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180246.7Link to Ensembl Protein Viewer:ENSMUSP00000135947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180246Re-query CCDS DB by Protein ID:ENSMUSP00000135947
Original member Current member NCBI NM_175667.4 NP_783598.1 Accepted alive Link to Nucleotide Sequence:NM_175667.4Link to Protein Sequence:NP_783598.1Re-query CCDS DB by Nucleotide ID:NM_175667Re-query CCDS DB by Protein ID:NP_783598Link to BLAST:NP_783598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783598.1 775 Q9D2J7 775 100% 0 0

Chromosomal Locations for CCDS 38249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 136537132 136537477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136544583 136544782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136545711 136545860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136546818 136546941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136549713 136550535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136552316 136552542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136553622 136553782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136554686 136554823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136555670 136555828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGGCTTTGGCAGACAAGAGACTTGAGAACTTACAGATCTACAGAGTTCTTCAGTGTGTTCGCAACAAAG
ACAAGAAGCAGATAGAAAAGCTGACCAGGCTTGGGTACCCTGAGCTAATCAACTTCACCGAACCCATAGA
TGGGCTGAGTGCTCTCCACTTAGCCTCCATTTCCAACGACACTGACATGGTCAGCTTCCTCCTCAAACTT
GGTGCGCATCCTGATGTGCAAGACCACATGGGCTGTACCCCGACCATGAGAGCTGCCGAGCTGGGCCATG
AGTTGTCAATGGAAATTTTAGCCAAGGCCAAAGCTGATATGACAATAGTTGATAATGAAGGAAAAGGTGT
TCTGTTTTACTGCATCCTGCCCACTAAGCGGCACTATCGATGCTCACTGATTGCCTTGGAGCATGGTGCA
GATGTCAACAATATCACCTATGAAGGGAAGCCAGTGTTCCTCAGAGCTTGCGAGGAAGCACATGATGTGA
AGGATATGTGCCTGACATTTTTGGAGAAAGGAGCCAATCCTAATGCTATCAACACATCCACAGGACGCAC
GGCTTTGATGGAATCGTCAAGAGAAGGGGTGCTGGAAATAGTTCGTGGCATATTGGAAAGAGGAGGTGAA
GTGAACGCATATGACAATGATAGACACCACGCTGCTCATTTTGCTGCCAAAGGAGGCTTTTTTGATATTC
TGAAGCTCCTCTTTGCCTACAATGGAGACATGGGGTTAATTGGAATGGATGGGAACACACCACTTCACTT
TGCTGCCATGGGGGGTTTTGCAGATTGCTGTAAATATATAGCTCAGCGAGGATGTGACCTGAAATGGAAA
AATTTGGAACATAAAACACCCCGAGTTGTGGCGAAAGACGGAGGCTTTAAAGCTGCTAGCAAGGAAATAC
GTCGAGCAGAGCGGACTGCCGCTAAACTCGCTAAGACAGGAGCAAAAAATCCTAACCCTCTCTGGGCCCT
CAGGCTGCATGACTGGTCCATAGAGCACGAGACTTCCCTTCGGAACGCCTTTAAGTTCGTGGACAGGGGC
GATGGCGTAGTCAGCAAAGATGACTTCGTGGTGGCCCTGGAGGAGAGGCAAGAGTATGCCACCTCAGAGC
AGTTGCTTTCCGTTGCTCAAATGCACGAAAAAAGTCGAGGAGGCGGGGTCAACATTAATGAGTTCTTTAA
GGGAACCAAATATTTAAGCAAGTCGTACGTATTGGGATCTTTCGGGCCTAAGAAAAAGAAAAGGGGGTTG
GGCAAAAAGCCAAGGAAAGGCAAGTTTGTTTTGCCTCTCCCCATCTGCACCATCCCGGAGAACGCCTTCC
CGCGGCGGCCAGATGGGGGCCCGCCCTACTACATGATTGAGACCTACCAGAATGTCTCCGACAGCCACAG
GTTCAACCGGGACCACCCGCCCGAGCACCCAATCCAGGATGATTCCGAGTGGTACATCGATGATCCGAGT
AGGGTCTTCGCAAATATTAGTTTTATCACCAAAGCAGGAGATCTGGCCTCTCTGAAAAAGGCCATCGAAA
CAGGAATACCCGTGGATATGAAGGACAATACTTACAAGACTCCTCTCATGATAGCGTGTGCCAGTGGCAA
CATTGATGTGGTCAAGTTTCTTATCGAAAAGGGGGCAAATGTTAATGCAACAGATAATTTTCTATGGACT
CCACTTCATTTTGCATGCCATGCTGGCCAGCAAGACATTGTTGAGCTTCTTGTTAAAGCTGGAGCTTCAA
TAGATGCAACATCAATCAACAACTCCACTCCGTTAAGCAGAGCCATTGAAAGCTGTAGGCTGGACACTGT
AAAATACCTACTTGATATGGGTGCCAAATTCCAGATTGAAAACAGAAAAGGACATGCTGCCATGGATATT
GCAAAGGCATATGCTGATTATAGAATAATTGATATGATAAAAGAAAAGCTAGATAACCTGCCTAAACAAG
CAGATAATCAGAAAATGAAAGGCAAGCTTCCTAAACTGAAGACAGAAGGCACGGATGTTAAGAAAGAAGA
GGAAACACTGTCATCCATTTACACTGTGCCAGCAATAACAGAGGAGAAGAAAGTCCACAGGGATAGTGTG
GTTTACCTCAATTCCCTGATTACCAGTGGCTTCACCAAGAAAGTTGATATCACATTTATCCCCAAAAGGA
TTTGGAGTCCTGAAGCCACAACAGCAGAGCTGATCAGGAAGAGGGAGCTCCGGAGGGAGAGGTTCACATA
CGAGGTGGACTTTGAAGACTTCATGATGCCTTTCCAAAAGAACATCACGGAGAAAGCTCAGGCACTGGAG
GCAACACTCAAGAACTAA

Translation (775 aa):
MALADKRLENLQIYRVLQCVRNKDKKQIEKLTRLGYPELINFTEPIDGLSALHLASISNDTDMVSFLLKL
GAHPDVQDHMGCTPTMRAAELGHELSMEILAKAKADMTIVDNEGKGVLFYCILPTKRHYRCSLIALEHGA
DVNNITYEGKPVFLRACEEAHDVKDMCLTFLEKGANPNAINTSTGRTALMESSREGVLEIVRGILERGGE
VNAYDNDRHHAAHFAAKGGFFDILKLLFAYNGDMGLIGMDGNTPLHFAAMGGFADCCKYIAQRGCDLKWK
NLEHKTPRVVAKDGGFKAASKEIRRAERTAAKLAKTGAKNPNPLWALRLHDWSIEHETSLRNAFKFVDRG
DGVVSKDDFVVALEERQEYATSEQLLSVAQMHEKSRGGGVNINEFFKGTKYLSKSYVLGSFGPKKKKRGL
GKKPRKGKFVLPLPICTIPENAFPRRPDGGPPYYMIETYQNVSDSHRFNRDHPPEHPIQDDSEWYIDDPS
RVFANISFITKAGDLASLKKAIETGIPVDMKDNTYKTPLMIACASGNIDVVKFLIEKGANVNATDNFLWT
PLHFACHAGQQDIVELLVKAGASIDATSINNSTPLSRAIESCRLDTVKYLLDMGAKFQIENRKGHAAMDI
AKAYADYRIIDMIKEKLDNLPKQADNQKMKGKLPKLKTEGTDVKKEEETLSSIYTVPAITEEKKVHRDSV
VYLNSLITSGFTKKVDITFIPKRIWSPEATTAELIRKRELRRERFTYEVDFEDFMMPFQKNITEKAQALE
ATLKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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