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Report for CCDS25666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25666.1 Public Mus musculus 11 Ubald2 23 108 98 CCDS HistoryNCBI Gene:319370Re-query CCDS DB by CCDS ID:25666.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057676.6 ENSMUSP00000058894.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057676.6Link to Ensembl Protein Viewer:ENSMUSP00000058894.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057676Re-query CCDS DB by Protein ID:ENSMUSP00000058894
Original member Current member NCBI NM_176902.3 NP_795876.1 Accepted alive Link to Nucleotide Sequence:NM_176902.3Link to Protein Sequence:NP_795876.1Re-query CCDS DB by Nucleotide ID:NM_176902Re-query CCDS DB by Protein ID:NP_795876Link to BLAST:NP_795876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795876.1 164 Q8BQH4 164 100% 0 0

Chromosomal Locations for CCDS 25666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116434309 116434428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116434559 116434621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116437994 116438305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGTCGGTGAACACGGACGAGCTGCGGCACCAGGTCATGATCAACCAGTTCGTGCTGGCCGCGGGCTGCG
CGGCCGATCAGGCGCAGCAGCTGCTGCAAGCGGCGCACTGGCAGTTCGAGACCGCCCTAAGCACGTTCTT
TCAAGAAAGCAACATTCCCAACAGCCACCACCACCCGCAGATGATGTGTACCCCCAGCAACACCCCTGCT
ACACCACCCAACTTCCCTGATGCATTGGCCATGTTCTCCAAGCTTCGAACCTCTGAGGGCCTGCAGAGCA
GCAGCAGCAGCCCCATGGCAGCCGTGGCCTGTTCCCCCCCTGCAAACTTCAGCCCCTTCTGGGCCGCATC
CCCACCCAATCACCAGGTGCCCTGGATCCCGCCCTCTTCCCCCAACACCTTCCATCTCCACTGCCCACAG
CCCACGTGGCCCCCCGGAGCATCGCAGGGGGGCGCCCCTCAGAAAGCCATGGCAGCCATGGATGGCCAGA
GATGA

Translation (164 aa):
MSVNTDELRHQVMINQFVLAAGCAADQAQQLLQAAHWQFETALSTFFQESNIPNSHHHPQMMCTPSNTPA
TPPNFPDALAMFSKLRTSEGLQSSSSSPMAAVACSPPANFSPFWAASPPNHQVPWIPPSSPNTFHLHCPQ
PTWPPGASQGGAPQKAMAAMDGQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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