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Report for CCDS22418.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22418.2 Public Mus musculus 8 Nwd1 23 108 98 CCDS HistoryNCBI Gene:319555Re-query CCDS DB by CCDS ID:22418.2See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22418.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22418.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161254.8 ENSMUSP00000124804.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161254.8Link to Ensembl Protein Viewer:ENSMUSP00000124804.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161254Re-query CCDS DB by Protein ID:ENSMUSP00000124804
Original member Current member NCBI NM_176940.5 NP_795914.3 Accepted alive Link to Nucleotide Sequence:NM_176940.5Link to Protein Sequence:NP_795914.3Re-query CCDS DB by Nucleotide ID:NM_176940Re-query CCDS DB by Protein ID:NP_795914Link to BLAST:NP_795914.3

Chromosomal Locations for CCDS 22418.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72653488 72653571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72657061 72657177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72662147 72662444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72666610 72667879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72670904 72671107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72672187 72672346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72674407 72674524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72675104 72675262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72681924 72682121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72688067 72688189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72692920 72693128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72695268 72695540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72697784 72697874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72702819 72702973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72704961 72705111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72707387 72707937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72709431 72709536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72711593 72711891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4566 nt):
ATGGACACAGAGCGAGAAGCCCTGCAGTGCACAGCCTACCCTGAGGTTCAGAGCTTCTGCCAAAGGCACG
GCTTGGCGTTTGAGGTGGTTGATCTGAGGTGGGGTATTCCGAATACGCAGGCCACTGACTACCTGACCAC
GGAACTCTGCTTAGAAGAACTGGAGCGCTGTCAGAAAACATCCATAGGACCAGCTTTTGTGGCCCTCCTG
GGTGACCAGTACGGCCCCTGCCCGGTTCCCCGGAGGATTGAGGAAAAGGAGTGGGAGGCACTAAGAGCTC
AGCTGACCTCCAGGCCTCGAGATCTGGAGCTGGTGACCAGACATTTCCAGAGAGACGACAACACCATTCC
TCCAACCTACGTCTTGCAGCCTTCAGGCTCACTGGTGGTCCCAGGGCCTGAGGAGGCCACCTTAACCTCT
GTCCTGAGAGGTGGAGCCCAGGAGGCCTGGAGGCTAGGCCTCATCAGCCAGGAGCAATGGATGTGCTATC
ACCGATCAGTTATTGAGTGGGAGATCGAGCTTGGCCTACTGAGCTCAGCAAGAGGGGACCAGGGAGCTAC
CGTCTTCCTGAGAGATGTACAGGACCTCAATAAACACATCTTGGATGATTGCTCTCTGAAGATGGTGGAT
CGGCTGGTAGATGGCTGCCTGGATACCAATGCCCAGAGTCTTCTCAGTGGTCTTAAAGGGCGCATACTAG
ATGCTCAGCCTGGAGCCCTAAAGTCCCACCACCTGTCCTGGAGCCGAGACCTGGTCAACCCCAAGAACAA
GGCTCACGCTCGTTACCTAAAGCAGTTGAGCGAGCAGTTCGTGGCCAGGACCAACCATCAGGTCCTGGAG
CAGCTTCGAGAGCTGGAGTTGGCCAGACAGGAGCTGGGTTGGCTCTACCAAGAGATCCGCCACCACCTCT
GGCAGAGCACAGAGTCTACCAAGGTCTTCTGCGGCCACCAGGAGCTCCTGGCCCAGCTCAGGCAGCAGCT
CAGACAGGATGAGAGCCGGACACATACTCCCTTGGTTCTCTTTGGACCACCAGGCATCGGGAAGACCTCT
CTCATGTGCAAGCTAGCCCAGCAGGTACCAGAGCTACTTGGCCACAAGACAGTGGTTGTCCTGAGGCTGC
TAGGGACATCAAAGCTGAGCCTGGATGCCCGCAGCCTCCTCAGGAGCCTGTCCTTCCAAGTGTGCTTGGC
ATATGGGCTGCCACTGCCCCCAGCCCAGGTCCTGGAGGCCCACAGCAGGGTGGGCCATTTCTTCCATACT
CTCCTCCACACCGTGTCACAGAGGAACTTTGAGTCCCTGGTGTTGCTCCTGGACTCCGTGGATGACCTGG
ACTCCATATGCCATTCTCCGAGGGTCTCTTGGCTGCCCCTCAAGTGTCCTCCAAGGGTGCACCTCATCCT
CTCTACATGCTCAGGCCAGCAGGTTTTACATAACCTGCAACAGACCCTCAAGGACCCCAGCACCTACTGG
GAGGTGAAGGCCCTGTCTGGAAGTCAAGGCCAGGAGTTCATACAGCTGCTGCTGGCTGCAGAGAAGAGGA
TGCTGAGCCCGGGTCAGAGAGATGTCCTCTGGGCCAGCCTCCCAGAGTGTGGCCACCCAGGGAGGCTAAG
GCTGGCCTTTGAGGAGGCCCGGAAGTGGGCCTCCTTCACTGTGCCAGTGCCCTTGGCCACTACAGCAGAG
GAAGCCACACACCAGCTCTGTATACGCCTGGAGGAGACACATGGGGCACTGCTGGTGGCTCATGTACTGG
GCTATATTGTGTCTTCCAGGTACGGTCTCTCAGAAGCAGAGCTGAAGGATGTGTTGTCTTTGGATGATGA
AGTCTTGCAGGCTGTGTACCGGGACTGGACGCCACCTAGCAAAGAGCTGCTGCGCTTCCCGCCCCTGCTG
TGGGTGCGGCTCCGCCGGGACCTGGGACACTGCCTAGTCAGGAGGCCCGTGGATGGCTGCATGCTACTGG
CCATTGCACACAGACAGCTGTCCCAGGTAATCCAAGTTCGATATCTGTCTGGGCCTGAGAGAGCCAAGAG
GCATGGCGTGCTAGCTGAATTCTTCTCTGGAGCCTGGAGCCAGGGGATCAAGAAACTTATCACCCTGCCG
CTTGTAGGGAAGCCCCTGAACCTGGACCGCAAGGTGGCCCCACAGCCACTGTGGTTCTCAAGCACAGTGG
CCAACCTGAGGAAGCTGACCGAACTGCCCTTCCATCTGCTGCATGCAGGCCGCTTGGAGGAGTTGAAGCA
GGAGGTTCTGGGGAACATGAGTTGGATCTCATGTCGGGGCATCTCTGGAGGCATTGAGGTCCTGCTGGAT
GATTTTGACATGTGTGCCCCTCACATGAACTCTCCTGAGGTTGATCTGGTTAGAGAAGCCATCCAGCTGT
GTGGCCCTGCTGTGGAGCTCCGGGGCCTGGAGAAGAGCGTCCTATACACCGAGCTCCTGGCCAGACTCCT
TTTCTTTGCTGCATCACATCCAGCAATGATCGGACAACTGTGCCAACAAGCCCAGAGCTGGTTCCGTGCC
TGCCCCTACCCAATGCTGGTGCCCCTGGCAGGATTCCTGCAGCCACCTGGTGGACCTCTTCGAGCCACTC
TTACTGGGTGTCACAAAGGCATCACCGCCATAGCATGGAGCCTGGAGGAGAAACTCCTGGTGGTGGGCAC
CCAGGATGGTGCCATGGTCGTGTGGGACGTGGAGGAACAACAGGTGGTACACGTTCTAATGGGACACACA
GCTGAAGTGAAGTGTGTGCGAGTGTTTGCCCAAGGGACTCTTGCCATCTCTGCATCAAAGGACCATACCC
TGCGTCTGTGGAGTCTGCTTTCCGGCCAGGAGAAAGTCACCATTTTGGATGGAGGGTCACAAAATCCCAC
AGAGCCCCAGAGTTGGGACCTTCATGTGGATGAGAGAAACAATGTTGTATACTCGACATCTGGTGCAAGG
ATCAACATGTGGAATCTGGAAACTTCGAAGCTGGTTTTCTGTATCACAGGAGATGTGTCTGATCCCTGGG
TCTGTGTGGCTTTGTTGGCTGCCCAGGGTTTGCTGCTTGCCCTGTCCAAGGGTGGCCAGGTCAGTCTGTG
GAGCTCAGCCATGGGAAAACTGCAGGAGAAACACCAGTTATCCAGCATCAAAGAAGAGACACCCACCTGT
GCCGTCTCCATCCAGTCCCGGGCAAGGCTGGTCGCTGGCTTCAGCAGTGGCTCCATTGCCCTGGTCTCCG
CTGGAGAAGACAGGCTGCTGGAGAAGCTCCCAGAAGCTGTGGGGTTCCTGGTGGTTTCTGAAGACGATTC
CCTTCTTGTGGCAGGCTTTGGAAGATTTGTGCGGATTTTCTTGGCTGACTCGCAAGGCTTCCACCGGTTC
ATGGCTTCGGATCTGGAACACGAGGACATGGTGGAGACAGCAGTCTTGGGTCCTGAGAACAATCTGATCA
TCACAGGGTCCCGGGATGCACTTATCCAGGTCTGGGATCTCAAGTCCACTAAGAAGCTGCAGTCTCCGAC
TCCATTTCTGGACCGCACCGGCCTCGCTGCAGTGTCCCACCATGGCAGCTTTGTCTACTTCCCTAAGGTT
GGGGACAAAAACAAAGTCACAATTTGGGACTTGGCAGAAGGTGAGGAGCAAGATTGCCTGGACACGTCCA
ATGAGGTCCGCTGTCTGGAGGTGGCCGAGCAGGCCAAGCTCCTCTTCACAGGCCTGGTTTCTGGGATCGT
GCTTGTGTTCCCCCTGAATTCCAGGCAAGATGTACTGTGCATCCCCCCACCTGAGGCACGCAAAGCTGTC
AACTGCATGTCCCTGAGCAAGAGTGAGAATCGTCTGGCCATTGCCTATGACAACATTGTCCTGGTGCTTG
ACATCAGCCCTGGGGACCCATGTCCGGCCATTGAAGGCCCCACCTACACCTTTTACACCCAGCTGCCTGA
GACCATAGTGAGTGTGGCTGTCCTGGCTGACTATCGTGTGGTCTACGGCATGAGCGATGGCAGCCTCTTC
CTGTACGACTGTGCATGCTCTAAAGTGTTCCCTCTGGAGGCCCATGGGAGCAGGGTGAGCTGTGTAGAGG
TCAGCCACAGTGAGCAGCTAGCAGTGAGCGGGGCTGAAGATGCACTGCTATGCCTCTGGGACCTGCAGGC
TTGCAGGGGGATGTTCGAGATGAGCTATGAGAACTCCTGCTGCAGAGGGGTGCGGTGTGCCTGCTTCTCC
AGGGATGACAAGCATGTATTTGCAGGCATGGAGGACCGCTCTGTCACTGCCTGGAGCACGGTGGATGGCA
CTCTTTTGGCTGTCCAGTTTGTTCATGCTGTGATCAACCGAATCATCCCTACCTCCAATGGCTTCATGGC
CCCCACAAGCCACGGCTATCTCATCCGTGAGCGCTTCCAGTGCCCGTCAGTCAGAGCCTCCCAGCAAGAC
CCTCTCAAGAACTTCAAGAAGGCAGTGTGGCTGGTAAAGACCAGGCAGAGGGAAGAGCTGGCTGCAGCAG
AAGCCTCCCAGGATGCAGAACCAGTGGCCGTAGAGGGAAAGGAATCAAAGTCAAATAAACGCTCACAGGT
CTGCCTCATACTCTGA

Translation (1521 aa):
MDTEREALQCTAYPEVQSFCQRHGLAFEVVDLRWGIPNTQATDYLTTELCLEELERCQKTSIGPAFVALL
GDQYGPCPVPRRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTIPPTYVLQPSGSLVVPGPEEATLTS
VLRGGAQEAWRLGLISQEQWMCYHRSVIEWEIELGLLSSARGDQGATVFLRDVQDLNKHILDDCSLKMVD
RLVDGCLDTNAQSLLSGLKGRILDAQPGALKSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNHQVLE
QLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLRQQLRQDESRTHTPLVLFGPPGIGKTS
LMCKLAQQVPELLGHKTVVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGLPLPPAQVLEAHSRVGHFFHT
LLHTVSQRNFESLVLLLDSVDDLDSICHSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQQTLKDPSTYW
EVKALSGSQGQEFIQLLLAAEKRMLSPGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAE
EATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLL
WVRLRRDLGHCLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSGAWSQGIKKLITLP
LVGKPLNLDRKVAPQPLWFSSTVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLD
DFDMCAPHMNSPEVDLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQSWFRA
CPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVEEQQVVHVLMGHT
AEVKCVRVFAQGTLAISASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQSWDLHVDERNNVVYSTSGAR
INMWNLETSKLVFCITGDVSDPWVCVALLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQLSSIKEETPTC
AVSIQSRARLVAGFSSGSIALVSAGEDRLLEKLPEAVGFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRF
MASDLEHEDMVETAVLGPENNLIITGSRDALIQVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKV
GDKNKVTIWDLAEGEEQDCLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAV
NCMSLSKSENRLAIAYDNIVLVLDISPGDPCPAIEGPTYTFYTQLPETIVSVAVLADYRVVYGMSDGSLF
LYDCACSKVFPLEAHGSRVSCVEVSHSEQLAVSGAEDALLCLWDLQACRGMFEMSYENSCCRGVRCACFS
RDDKHVFAGMEDRSVTAWSTVDGTLLAVQFVHAVINRIIPTSNGFMAPTSHGYLIRERFQCPSVRASQQD
PLKNFKKAVWLVKTRQREELAAAEASQDAEPVAVEGKESKSNKRSQVCLIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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