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Report for CCDS38275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38275.1 Public Mus musculus 2 Defb20 23 108 98 CCDS HistoryNCBI Gene:319579Re-query CCDS DB by CCDS ID:38275.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109836.2 ENSMUSP00000105462.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109836.2Link to Ensembl Protein Viewer:ENSMUSP00000105462.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109836Re-query CCDS DB by Protein ID:ENSMUSP00000105462
Original member NCBI NM_176950.3 NP_795924.2 Updated not alive Link to Nucleotide Sequence:NM_176950.3Link to Protein Sequence:NP_795924.2Re-query CCDS DB by Nucleotide ID:NM_176950Re-query CCDS DB by Protein ID:NP_795924
Current member NCBI NM_176950.4 NP_795924.2 Accepted alive Link to Nucleotide Sequence:NM_176950.4Link to Protein Sequence:NP_795924.2Re-query CCDS DB by Nucleotide ID:NM_176950Re-query CCDS DB by Protein ID:NP_795924Link to BLAST:NP_795924.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795924.2 96 Q30KP3 96 100% 0 0

Chromosomal Locations for CCDS 38275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152477123 152477171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152479354 152479595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGAAGCTGCTTCAGGTTCTCCTTGTTTTGCTGTTTGTGGCACTTGCAGATGGTGCACAGCCCAAAAGAT
GTTTTAGCAACGTAGAAGGCTACTGTAGGAAGAAATGCAGATTAGTGGAGATATCTGAGATGGGATGCCT
GCATGGGAAATACTGTTGTGTTAATGAGCTGGAGAACAAAAAGCACAAGAAGCACTCAGTCGTTGAGGAG
ACAGTCAAACTCCAAGACAAGTCAAAAGTACAAGACTATATGATCCTGCCCACGGTCACATACTACACCA
TCAGTATCTGA

Translation (96 aa):
MKLLQVLLVLLFVALADGAQPKRCFSNVEGYCRKKCRLVEISEMGCLHGKYCCVNELENKKHKKHSVVEE
TVKLQDKSKVQDYMILPTVTYYTISI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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