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Report for CCDS17777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17777.1 Public Mus musculus 3 Rnpc3 23 108 98 CCDS HistoryNCBI Gene:67225Re-query CCDS DB by CCDS ID:17777.1Re-query CCDS DB by GeneID:67225See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092154.9 ENSMUSP00000089792.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092154.9Link to Ensembl Protein Viewer:ENSMUSP00000089792.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092154Re-query CCDS DB by Protein ID:ENSMUSP00000089792
Original member Current member EBI ENSMUST00000106536.7 ENSMUSP00000102146.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106536.7Link to Ensembl Protein Viewer:ENSMUSP00000102146.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106536Re-query CCDS DB by Protein ID:ENSMUSP00000102146
Original member Current member NCBI NM_001038696.1 NP_001033785.1 Accepted alive Link to Nucleotide Sequence:NM_001038696.1Link to Protein Sequence:NP_001033785.1Re-query CCDS DB by Nucleotide ID:NM_001038696Re-query CCDS DB by Protein ID:NP_001033785Link to BLAST:NP_001033785.1
Original member Current member NCBI NM_026043.3 NP_080319.2 Accepted alive Link to Nucleotide Sequence:NM_026043.3Link to Protein Sequence:NP_080319.2Re-query CCDS DB by Nucleotide ID:NM_026043Re-query CCDS DB by Protein ID:NP_080319Link to BLAST:NP_080319.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033785.1 514 Q3UZ01-1 514 100% 0 0
NP_080319.2 514 Q3UZ01-1 514 100% 0 0

Chromosomal Locations for CCDS 17777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113608355 113608411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113609038 113609170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113611058 113611116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113611209 113611303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113613758 113613916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113615363 113615511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113616748 113616873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113620025 113620167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113621109 113621177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113621832 113621943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113622366 113622449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113624939 113625057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113628345 113628392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113629863 113630054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGCGGGGCCTGAGCCGCCGATGCCGCTGTCCCGAGGCGGCCCAGGCTCCGCTTCGCTTTCTCCGCCCC
GGGGAGACCGCACCCTCCTCGTCAGGCACCTGCCGGCCGAGCTGACGGCTGAGGAGAAGGAGGACTTACT
GAAGTACTTCGGGGCGCAGTCGGTGCGCGTCCTGTCAGATAAGGGGCGCCTGAAACACACAGCATTTGCT
ACTTTCCCTAATGAAAAAGCAGCAATAAAGGCACTGACGAGACTCCATCAGCTGAAACTTCTAGGTCATA
CTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCGAGTTCACTCCCCATGTTCCACCTCAAATACAGAGAA
AAAGAAAAGGTTGGATGACACTGTGGAAAATGATAAAGAGAAGAAAGAACCTGACATTTTAACAGTAGAA
AATGGAATTGCACCAAATCATGGGCTGACTTTTCCTCTGAATTCATGCCTTAAATATATGTATCCTCCAC
CATCAAGCACAATCCTCGCAAATATAGTAAATGCTCTGGCAAGTGTCCCAAAATTCTATGTACAGGTGCT
TCATCTTATGAATAAAATGAATTTGCCCACACCATTTGGACCGATTACTGCACGACCTCCTATGTATGAG
GACTATATGCCATTGCATGCACCCCTTCCACCTACATCCCCTCAACCGCCTGAGGAGCCTCCCTTACCAG
ATGAGGATGAGGATTTATCTAGCAAAGAATCAGAATATGAAAGCAGTGATGAGGAGGACCGACAGAGAAT
GAACAGATTAATGGAACTAGCAAATCTTCAGCCCAAAAGACCCAAAACAGAAAAGCCACGCCACGTGAGA
AAAAAGCGAAAAATAAAGGATATGTTGAATATACCTTCATCAGCTTCACATAGTTTGCATCCTGTGCTGT
TACCTTCGGATGTATTTGACCAGCCACAATCTGTAGGTAATAAAAAAATTGAGTTCAATATATCAACCAA
CATGCCTGCAGCATTTAACAAAGATTTGGAGACACAACCAAATAATGAAGAAGAAAATTCTGATTCACCA
GACACTGGACTTGATTCAAATACAGGATTTGGCAAAATCTTCCCTAAACCTAATTTGAACATCACAGAAG
AGATTACAGAAGACTCTGATGAAATACCTTCACAATTTATTTCTAGAAAAGAGTTGGAAAAGGGTCGTAT
TTCTAGAGAAGAAATGGAAACACTTTCAGTTTTTAGAAGTTATGAACCTGGTGAACCAAACTGCAGAATT
TATGTAAAGAATTTAGCTAGACATGTTCAGGAAAAGGACCTTAAATTTATATTTGGAAGATACGTTGACT
TTTCTTCAGAAACACAGCGGATCATGTTTGATATTCGCTTAATGAAAGAAGGACGCATGAAAGGACAAGC
TTTTGTTGGACTTCCAAATGAAAAAGCAGCCGCTAAAGCGTTGAAAGAAGCTAATGGCTATGTTCTTTTT
GGAAAACCCATGGTGGTTCAGTTTGCTCGATCTGCTAGACCAAAACAGGATTCTAAAGAAGGAAAACGGA
AGTGA

Translation (514 aa):
MAGPEPPMPLSRGGPGSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFA
TFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCSTSNTEKKKRLDDTVENDKEKKEPDILTVE
NGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPFGPITARPPMYE
DYMPLHAPLPPTSPQPPEEPPLPDEDEDLSSKESEYESSDEEDRQRMNRLMELANLQPKRPKTEKPRHVR
KKRKIKDMLNIPSSASHSLHPVLLPSDVFDQPQSVGNKKIEFNISTNMPAAFNKDLETQPNNEEENSDSP
DTGLDSNTGFGKIFPKPNLNITEEITEDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRI
YVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLF
GKPMVVQFARSARPKQDSKEGKRK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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