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Report for CCDS21797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21797.1 Public Mus musculus 7 Polr3e 23 108 98 CCDS HistoryNCBI Gene:26939Re-query CCDS DB by CCDS ID:21797.1Re-query CCDS DB by GeneID:26939See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033173.14 ENSMUSP00000033173.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033173.14Link to Ensembl Protein Viewer:ENSMUSP00000033173.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033173Re-query CCDS DB by Protein ID:ENSMUSP00000033173
Original member Current member EBI ENSMUST00000106483.3 ENSMUSP00000102092.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106483.3Link to Ensembl Protein Viewer:ENSMUSP00000102092.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106483Re-query CCDS DB by Protein ID:ENSMUSP00000102092
Original member NCBI NM_025298.3 NP_079574.2 Updated not alive Link to Nucleotide Sequence:NM_025298.3Link to Protein Sequence:NP_079574.2Re-query CCDS DB by Nucleotide ID:NM_025298Re-query CCDS DB by Protein ID:NP_079574
Current member NCBI NM_025298.4 NP_079574.2 Accepted alive Link to Nucleotide Sequence:NM_025298.4Link to Protein Sequence:NP_079574.2Re-query CCDS DB by Nucleotide ID:NM_025298Re-query CCDS DB by Protein ID:NP_079574Link to BLAST:NP_079574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079574.2 710 Q9CZT4-1 710 100% 0 0

Chromosomal Locations for CCDS 21797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 120922933 120922968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120924222 120924272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120926944 120927021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120927888 120928003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120928428 120928510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120930879 120930986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120931261 120931310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120932134 120932253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120933307 120933392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120933686 120933730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120933833 120933924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120934773 120934893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120937603 120937684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120938996 120939055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120939139 120939296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120939749 120939810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120940302 120940825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120942490 120942567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120944547 120944672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120945476 120945532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGCCAATGAAGAAGATGACCCAGTCATACAGGAGATCGATGTGTACTTGGCTAAAAGTCTGGCAGAGA
AGCTGTATCTCTTTCAGTATCCTGTGCGTCCTGCTTCAATGACCTATGATGACATTCCACATCTCTCAGC
CAAGATCAAGCCCAAACAGCAGAAGGTAGAGCTTGAGATGGCCATCGACACCCTGAATCCCAACTACTGC
CGCAGCAAAGGGGAGCAGATCGCACTGAACGTGGACGGTGCCTGTGCTGACGAGACTAGCACATATTCCT
CAAAGCTGATGGACAAGCAGACCTTCTGCTCCTCCCAGACCACCAGCAACACAGCTCGTTATGCCGCTGC
ACTCTACAGGCAAGGTGAGCTCCACCTGACACCTTTACATGGCATCCTACAGCTTCGGCCCAGCTTCTCC
TACCTTGATAAGGCAGATGCCAAGCACCGAGAGAGGGAGGCAGCCAATGAGGCAGGGGATTCTTCTCAGG
ACGAGGCAGAAGAAGACGTTAAGCAGATCACGGTACGGTTCTCCAGGCCAGAGTCCGAGCAGGCTCGCCA
GCGCCGCGTGCAGTCCTATGAGTTCTTGCAGAAGAAGCATGCAGAAGAACCCTGGGTCCACCTGCACTAC
TATGGCATGAGGGACAGCCGCTCAGAGCATGAGCGCCAGTACCTGCTGTGTCAGGGATCCAGCGGGGTAG
AGAACACGGAGCTCGTCAAGTCACCCAGTGAATACCTCATGATGCTCATGCCGCCCAGCCCAGAGGAGGA
GAAGGACAAGCCTGTGGCTCCCAGCAATGTCTTATCTATGGCCCAGCTGCGTACATTGCCTCTGGCTGAT
CAGATTAAGGTCCTGATGAAGAACGTGAAAGTCATGCCCTTCGCTAATCTCATGAGCCTCCTGGGCCCCT
CTGTGGACTCTGTGGCTGTTCTACGTGGCATCCAGAAGGTGGCGATGTTAGTCCAAGGAAACTGGGTGGT
AAAGAGTGACATCCTGTATCCCAAGGATTCTTCCAGCCCTCACAGTGGCATGCCTGCTGAGGTGCTCTGC
AGGGGCCGAGACTTTGTTATGTGGAAGTTCACACAGAGCCGATGGGTGGTAAGAAAGGAGGTGGCAGCAG
TGACCAAACTCTGCGCTGAGGATGTGAAGGACTTTCTGGAGCACATGGCTGTAGTGAGAATCAACAAAGG
CTGGGAGTTCTTACTGCCTTACGACCTGGAGTTTATCAAGAAGCATCCAGATGTGGTCCAGCGGCAGCAC
ATGCTGTGGTCGGGCATCCAGGCCAAATTAGAAAAAGTCTATAATCTCGTAAAAGAAACCATGCCAAAGA
AGCCGGATGGACAATCAGCGCCTGTTGGTCTGGTCTCTGGGGAACAGCGGGTCCAAACAGCCAAAACCAA
GGCCCAGCAGAACCATGCCTTCTTGGAGCGTGAACTGCAGCGACGGAAGGAGCAGATGCGGGCAGCCACA
GTCCTGCCCAGCGTGCAGATCAAGGAGGAACCCCTGAGTGAGGAGGAAGCCGATGGGGCTGAGCTGGAGG
CTGAGGAAGAGGAGCCCATGGACACTGCACCCAGCACTTGCCTCAGCACCAAGTTGGCCAATGGGCTGCC
TGCTGGGCGGGCAGTGGGTGGGGACAGCCTAAATGGACACCCAGTTCCAGGCTGTGCCAGCAACCCGGTT
GCCTGTGAACTGAAGGCTTTTGTGGAAGCCACCTTTCAGAGACAGTTTGTGCTCACGCTGAGCGAACTCA
AGCGCCTCTTCAACCTGCACCTGGCAGGCCTGCCCCCGGGCCATATACTCTTCAGTGGCGTCTCAGACCG
AATGCTACAGGATACGGTGCTGGCCGCTGGCTGCAAGCAGATACTGGTGCCTTTTCCCCCACAGACTGCT
GCTTCCCCTGATGAGCAGAAGGTATTTGCCCTCTGGGAGTCTGGAGACATGAGTGACCAGCATCGGCAGG
TTTTGCTTGAAATATTTTCCAAAAATTACCGAGTACGTCGGAACTTGATCCAGTCTCGGCTGACTCAAGA
ATGTGGAGAAGAGCTAAGCAAACAGGAGGTGGATAAAGTGCTAAAGGACTGTTGTGTAAGCTGTGGTGGC
ATGTGGTACCTTAAGGGGACAGTACAATCCTGA

Translation (710 aa):
MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYC
RSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYRQGELHLTPLHGILQLRPSFS
YLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY
YGMRDSRSEHERQYLLCQGSSGVENTELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLAD
QIKVLMKNVKVMPFANLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLC
RGRDFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDVVQRQH
MLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFLERELQRRKEQMRAAT
VLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANGLPAGRAVGGDSLNGHPVPGCASNPV
ACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLPPGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTA
ASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGG
MWYLKGTVQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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