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Report for CCDS26360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26360.1 Public Mus musculus 13 Hfe 23 108 98 CCDS HistoryNCBI Gene:15216Re-query CCDS DB by CCDS ID:26360.1Re-query CCDS DB by GeneID:15216See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091706.13 ENSMUSP00000089298.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091706.13Link to Ensembl Protein Viewer:ENSMUSP00000089298.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091706Re-query CCDS DB by Protein ID:ENSMUSP00000089298
Original member Current member NCBI NM_010424.5 NP_034554.2 Accepted alive Link to Nucleotide Sequence:NM_010424.5Link to Protein Sequence:NP_034554.2Re-query CCDS DB by Nucleotide ID:NM_010424Re-query CCDS DB by Protein ID:NP_034554Link to BLAST:NP_034554.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034554.2 359 P70387 359 100% 0 0

Chromosomal Locations for CCDS 26360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23704386 23704426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23705624 23705734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23705861 23706136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23706767 23707066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23708028 23708291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23710627 23710714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAGCCTATCAGCTGGGCTCCCTGTGCGGCCGCTGCTGCTGCTGCTGCTACTGCTGTGGTCCGTGGCCC
CGCAGGCACTGCCACCGCGTTCACATTCTCTAAGATACCTCTTCATGGGTGCCTCAGAGCCAGACCTCGG
GCTGCCTTTGTTTGAGGCTAGGGGCTATGTGGATGACCAGCTCTTTGTGTCCTACAATCATGAGAGTCGC
CGTGCTGAGCCCAGGGCCCCGTGGATCTTGGAGCAAACCTCAAGCCAGCTGTGGCTGCATCTGAGTCAGA
GCCTGAAAGGGTGGGACTACATGTTCATAGTAGACTTCTGGACCATCATGGGCAACTATAACCACAGTAA
GGTCACGAAGTTGGGAGTGGTGTCCGAGTCCCACATCCTGCAGGTGGTCCTAGGCTGTGAGGTGCATGAA
GACAACAGTACCAGCGGCTTCTGGAGATATGGTTATGACGGGCAAGATCACCTGGAATTCTGCCCCAAGA
CACTAAACTGGAGCGCAGCCGAGCCAGGGGCCTGGGCCACCAAGGTGGAATGGGACGAGCACAAGATCCG
TGCCAAACAGAACAGGGACTACCTGGAGAAGGACTGCCCCGAGCAGCTGAAACGGCTCCTGGAGCTGGGG
AGAGGCGTTCTGGGACAGCAAGTGCCTACTTTGGTGAAAGTGACTCGCCACTGGGCCTCTACGGGGACCT
CTCTAAGGTGTCAGGCTCTGGACTTCTTCCCCCAGAACATCACTATGAGGTGGTTGAAGGACAACCAACC
ACTGGATGCCAAAGATGTCAACCCCGAGAAGGTGCTACCTAACGGGGATGAGACCTATCAAGGCTGGCTG
ACATTGGCCGTGGCCCCTGGGGACGAGACAAGGTTCACCTGTCAAGTGGAGCACCCAGGCCTGGACCAGC
CTCTCACTGCCTCTTGGGAGCCCTTGCAATCTCAGGCCATGATTATCGGAATCATCAGTGGAGTCACCGT
CTGTGCCATCTTCTTGGTTGGAATTCTGTTCCTAATCTTAAGGAAAAGGAAGGCTTCAGGAGGAACCATG
GGTGGCTATGTCTTAACAGACTGTGAGTGA

Translation (359 aa):
MSLSAGLPVRPLLLLLLLLWSVAPQALPPRSHSLRYLFMGASEPDLGLPLFEARGYVDDQLFVSYNHESR
RAEPRAPWILEQTSSQLWLHLSQSLKGWDYMFIVDFWTIMGNYNHSKVTKLGVVSESHILQVVLGCEVHE
DNSTSGFWRYGYDGQDHLEFCPKTLNWSAAEPGAWATKVEWDEHKIRAKQNRDYLEKDCPEQLKRLLELG
RGVLGQQVPTLVKVTRHWASTGTSLRCQALDFFPQNITMRWLKDNQPLDAKDVNPEKVLPNGDETYQGWL
TLAVAPGDETRFTCQVEHPGLDQPLTASWEPLQSQAMIIGIISGVTVCAIFLVGILFLILRKRKASGGTM
GGYVLTDCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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