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Report for CCDS37075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37075.1 Public Mus musculus 15 Taf2 23 108 98 CCDS HistoryNCBI Gene:319944Re-query CCDS DB by CCDS ID:37075.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041733.8 ENSMUSP00000043733.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041733.8Link to Ensembl Protein Viewer:ENSMUSP00000043733.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041733Re-query CCDS DB by Protein ID:ENSMUSP00000043733
Original member Current member NCBI NM_001081288.1 NP_001074757.1 Accepted alive Link to Nucleotide Sequence:NM_001081288.1Link to Protein Sequence:NP_001074757.1Re-query CCDS DB by Nucleotide ID:NM_001081288Re-query CCDS DB by Protein ID:NP_001074757Link to BLAST:NP_001074757.1

Chromosomal Locations for CCDS 37075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55016342 55016601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55022202 55022324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55027172 55027277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55028318 55028547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55031046 55031155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55034163 55034232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55036518 55036657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55038239 55038432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55040363 55040473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55043109 55043249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55045736 55045988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55047418 55047483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55048226 55048335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55048627 55048741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55049395 55049549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55052116 55052251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55054234 55054319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55055787 55055886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55058799 55058912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55059903 55060087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55062053 55062284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55062993 55063134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55064588 55064706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55065860 55066020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55071393 55071447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55071847 55071929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3597 nt):
ATGCCGCCCACCGGCTTAGAGTCCTCCAGGATGAACAGGAAGAAAGGAGACAAGGGCTTCGAAAGCCCAC
GGCCGTACAAATTAACCCATCAGGTCGTCTGTATCAACAACATAAACTTCCAGCGAAAATCAGTTGTGGG
ATTTGTGGAGCTGACTATATTTCCCACAGTTGCCAACTTGAATAGAATTAAGTTGAACAGTAAACAGTGT
AGAATATACCGAGTCCGGATCAATGACTTGGAGGCCGCTTTTATTTATAATGATCCAACCTTAGAAGTTT
GTCACAGTGAATCGAAACAGAGAAACCTCAATTATTTTTCCAATGCGTATGCAGCTGCAGTCAGTGCTGT
GGACCCTGATGCGGGGAATGGAGAACTCTGCATTAAGGTTCCCTCAGAGCTCTGGAAACATGTCGATGAG
TTGAAGGTCCTGAAGATACATATTAATTTTTCTTTGGATCAACCAAAAGGAGGTCTTCATTTTGTGGTAC
CCAGTGTAGAGGGGAGTATGGCAGAGAGAGGTGCTCATGTCTTCTCTTGCGGGTATCAAAATTCTACAAG
ATTTTGGTTCCCGTGTGTCGATTCATACTCTGAGCTGTGTACCTGGAAGTTAGAATTTACAGTAGATGCT
GCAATGGTAGCCGTGTCCAATGGAGATTTGGTGGAGACCGTGTATACCCATGACATGAGGAAGAAGACCT
TCCATTATATGCTTACTATTCCTACTGCAGCATCCAATATCTCCTTGGCCATTGGACCATTTGAAATACT
CGTGGATCCATACATGCATGAGGTTACCCATTTTTGTTTGCCTCAACTTCTTCCGTTACTTAAACATACT
ACGTCATACATTCACGAAGTTTTTGAATTTTATGAAGAAATTTTGACTTGTCGCTATCCGTACTCCTGTT
TTAAGACGGTCTTCATTGATGAGGCATATGTTGAAGTGGCCGCTTACGCTTCTATGAGCATTTTCAGCAC
AAACCTTCTGCACAGCGCCATGATTATAGACGAGACGCCGCTGACCAGACGGTGCTTGGCACAGGCTTTA
GCACAGCAGTTCTTCGGATGTTTCATATCCAGGATGTCTTGGTCTGATGAATGGGTGCTGAAGGGAATTT
CAGGCTATATTTATGGACTGTGGATGAAAAAAACATTCGGAGTCAATGAGTACCACCATTGGATTAAAGA
GGAGCTAGATAAAATAGTGGCGTATGAACTGAAAACTGGGGGAGTTTTGCTTCATCCCATATTTGGTGGT
GGAAAAGAAAAGGATAACCCCGCATCTCACCTCCACTTTTCCATAAAGCATCCACATACACTGTCCTGGG
AGTACTACACTATGTTCCAGTGTAAAGCTCACCTCGTGATGAGACTGATTGAAAACAGAATCAGCATGGA
ATTTATGCTGCAAGTTTTCAATAAACTACTAAGTCTGGCCAGCACTGCTTCGTCTCAGAAGTTCCAGTCA
CATATGTGGAGCCAGATGCTGGTTTCCACTTACGGGTTTTTGAAGTCCATTTCCAATGTCTCTGGCAAAG
ACATCCAGCCCCTAATAAAGCAGTGGGTAGACCAGAGTGGAGTGGTAAAGTTTTACGGAAGTTTTGCGTT
TAATAGAAAACGAAATGTTTTAGAACTAGAAATAAAGCAAGATTACACATCTCCTGGCACCCAGAAGTAC
GTGGGACCTCTTAAAGTGACAGTGCAAGAGTTAGATGGATCCTTCAACCATACCTTGCAAATTGAAGAAA
ACAGCCTTAAACATGACATACCCTGCCACTCCAAGAGCAGAAGGAATAAGAAGAAAAAAATCCCACTGAT
GAATGGGGAAGAAGTTGATATGGATCTTTCTGCAATGGATGCTGATTCCCCTTTGTTGTGGATAAGGATA
GACCCAGATATGTCCGTCCTGAGGAAGGTGGAGTTTGAGCAGGCTGATTTTATGTGGCAGTATGAGCTCC
GCTATGAGAGAGATGTTGTTGCTCAGCAGGAATCCATCTTGGCCTTGGAAAAATTCCCCACTCCGGCATC
GCGCCTTGCGCTCACTGATATACTAGAGCAAGAGCAGTGTTTCTACCGAGTCAGGATGTCAGCGTGCTTC
TGTCTTGCAAAGATTGCCAACTCAATGGTGAGCACGTGGACAGGGCCGCCAGCCATGAAGTCTCTCTTTA
CTAGAATGTTCTGCTGTAAAACCTGCCCCAACATTGTGAAGACAAACAACTTCATGAGTTTCCAAAGCTA
CTTTCTGCAGAAGACTATGCCGGTTGCAATGGCTTTGTTAAGAGATGTACATAACCTTTGTCCTAAAGAA
GTTTTAACATTTATTTTAGACTTAATCAAGTACAATGACAACAGAAAAAATAAGTTTTCAGATAACTATT
ATCGTGCAGAAATGATTGATGCCCTTGCTAACTCAGTTACACCTGCTGTCAGTGTGAATAATGAAGTCAG
AACTTTGGATAACTTAAATCCTGATGTGCGACTAATTCTTGAAGAAATAACCCGGTTTCTGAATATGGAA
AAGCTTCTCCCAAGTTACAGACACACCATCACTGTCAGTTGCTTGAGAGCCATCCGGGTGCTTCAGAAGA
ACGGGCACGTGCCGAGTGATGCATCTCTCTTCAAATCCTACGCCGAGTATGGCCACTTTGTGGACATCAG
GATAGCAGCTCTGGAAGCCGTCGTTGATTACACTAAAGTGGACAGGAGTTATGAAGAACTTCAGTGGCTA
CTTAATATGATTCAGACTGACCCTGTTCCCTATGTGAGGCATAAGATTCTAAACATGCTGACTAAAAATC
CACCATTTACAAAGAACATGGAATCTCCTTTATGCAACGAAGCCCTGGTAGATCAGCTCTGGAAGCTGAT
GAATTCTGGCACTGCACATGACTGGAGGTTACGGTGTGGTGCTGTGGACTTGTACTTCACGCTGTTTGGC
CTCAGCAGACCGTCTTGCTTACCCTTGCCAGAGCTCGGGCTTGTTCTTAACCTAAAAGAGAAGAAAGCTG
TCTTGAATCCTACCATTATTCCAGAAGCTGGAGTAGGCAACCAGGAGTCTGCGAGTAACCCAGGCTGCCA
CGCTCAGCTAGCTGGATTCCAGAACCCTTTTTCAAGTTCTCAGGATGAGGAGGAGGTTGACATGGATACT
GTTCATGACAGTCAAGCCTTCATCTCCCATCATCTGAACATGCTCGAAAGGCCGTCCACTCCAGGGCTCT
CTAAGTACCGGCCGTCCGGCTCCAGATCCTCCTTAATGCCCCAGCATTCATTAGGCTGTGACATCACACC
ACCCACAAAACCCCAGTGGAGTATGGAGCTGTCCCGAAAGGGAGCAGGTAAAGAGCAGCCTTTGGAGATG
GGTGTGCATTCCATGGTGGCAGCCCCGCTCTCCATGTTTGCTAAGGAGGCTCTGTCATCGCGACACAGCG
AGCACCATCACCACCATCACCATGAGCACAAGAAGAAGAAGAAGAAGCACAAGCACAAACACAAGCACAA
GCACAAGCACGACAGCAAGGACAAGGACAGGGAGCCCTTCGCCTTCTCCAGCCCTGCCAGCGGCAGGTCT
GTGCGCTCCCCCTCACTCTCAGACTGA

Translation (1198 aa):
MPPTGLESSRMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQC
RIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDE
LKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDA
AMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHT
TSYIHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQAL
AQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYHHWIKEELDKIVAYELKTGGVLLHPIFGG
GKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQS
HMWSQMLVSTYGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKY
VGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRI
DPDMSVLRKVEFEQADFMWQYELRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACF
CLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKE
VLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNME
KLLPSYRHTITVSCLRAIRVLQKNGHVPSDASLFKSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWL
LNMIQTDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSGTAHDWRLRCGAVDLYFTLFG
LSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAGVGNQESASNPGCHAQLAGFQNPFSSSQDEEEVDMDT
VHDSQAFISHHLNMLERPSTPGLSKYRPSGSRSSLMPQHSLGCDITPPTKPQWSMELSRKGAGKEQPLEM
GVHSMVAAPLSMFAKEALSSRHSEHHHHHHHEHKKKKKKHKHKHKHKHKHDSKDKDREPFAFSSPASGRS
VRSPSLSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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