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Report for CCDS40773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40773.1 Public Mus musculus 9 Fbxw16 23 108 98 CCDS HistoryNCBI Gene:320083Re-query CCDS DB by CCDS ID:40773.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084984.7 ENSMUSP00000082051.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084984.7Link to Ensembl Protein Viewer:ENSMUSP00000082051.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084984Re-query CCDS DB by Protein ID:ENSMUSP00000082051
Original member Current member NCBI NM_177070.3 NP_796044.2 Accepted alive Link to Nucleotide Sequence:NM_177070.3Link to Protein Sequence:NP_796044.2Re-query CCDS DB by Nucleotide ID:NM_177070Re-query CCDS DB by Protein ID:NP_796044Link to BLAST:NP_796044.2

Chromosomal Locations for CCDS 40773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109432402 109432501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109436167 109436291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109436580 109436758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109438171 109438381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109439541 109439699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109441051 109441260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109446549 109446667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109447787 109447950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109448145 109448182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109449019 109449108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGAGATCCATTTACCTAGTTTGCCTATGATGGAAATCCTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGTTGCCCAAGTGAACAAGAACTGGAATGCACTTGCCAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCA
GAAGAGATGGCTCTACTGTGACATGGTCACCCTACAGCTCCATGGCAAAAAGACATGGAAGCAGTTCTTC
TTTTACAGAACATGGCAAGAACATGCCAAATCCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTC
CTGTGGAGTTTGAATTTCGGGCTTATGCATATTATATCTCAAGGCATGGCTTAACAAGAAATGGACAAGG
GAAGTCTGCTGTCTGTATGGTGACTTCCACGAACAGGATTTCTACCTGGGATATTCACGAGGGTGCTATG
ACCTGGGAAAGCCCAGTACAGGAATCCTATATTGAACTGATGACTACCCTCCCTGAGATGCACATTGCGG
TCACTGTAGATATAAGCTCAACTATCAAACTATGGGACTGTCACAACAGGGATGCTCTGGCAACTAAGAG
CATATTCTCTCCCTGTCAAATACTGAAAGCTGTGTTTACAAAGGATGGCCCAATTGTCTTGGTAGGTGAT
ACCTCGGGAAACCTCTACATCTTTAGGATTCCTGACTTACACCTCATTTCCAGACACAATGTATTCCCAT
ACGCTATTGATGAACTCCACTGCTCTCCTCAGAATAAATGGGTCTTGCTGATTATAAGAAACCCACAAGT
CTTGACAAAGGTGGTTTACATGAGCAGCTTACTGAGGACATCAGAATTTTCTGATCCAGTGTCTACCAGT
CTCAAATTTCCATTATGCCAAGGAGTCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCTTGATGGCCA
GAAATGCACCCCCAAGACCCGCAAAATTTGGCACATTTGATATGAAGCTGGAAGAGATCGGGAACAAAGT
AACTGTTCAAGGACATTTGGTAGCAAGTTTCTCTTTGCAAGACTACAAGGAGCGTGCAGAGTGGATGGGA
GTCAGTGAAAAGGACACGATTGTTTGTTCAACTGGATCCTCTCTCTTGCTCTTCGACATGAATGGTCTCC
GTCTGCAGACATTTCAGTACTGCCCAGAACAGATCTTTAGACTATGGGTGGACCCTGTTCATGTCATTGT
CACCTGTAATGATGGCTCTTTGGATATATACGCATGGGAGGAGAGAAGCCCACTGCTAAGGAAGTGTTAT
CGACTGCAAAATAGGAGATATCTGCTACCGTCCAGCTTCATTAACAATGCACTATGTGATGATGTGAGCA
TAATTGGAGTGATGATAAGTAGTCCCTCCTTCTGCTATCTGATGGCATATACCTTGAACTCTTGA

Translation (464 aa):
MEIHLPSLPMMEILSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLYCDMVTLQLHGKKTWKQFF
FYRTWQEHAKSRAKPEDFTYKEIPVEFEFRAYAYYISRHGLTRNGQGKSAVCMVTSTNRISTWDIHEGAM
TWESPVQESYIELMTTLPEMHIAVTVDISSTIKLWDCHNRDALATKSIFSPCQILKAVFTKDGPIVLVGD
TSGNLYIFRIPDLHLISRHNVFPYAIDELHCSPQNKWVLLIIRNPQVLTKVVYMSSLLRTSEFSDPVSTS
LKFPLCQGVFWTPRREDRITLMARNAPPRPAKFGTFDMKLEEIGNKVTVQGHLVASFSLQDYKERAEWMG
VSEKDTIVCSTGSSLLLFDMNGLRLQTFQYCPEQIFRLWVDPVHVIVTCNDGSLDIYAWEERSPLLRKCY
RLQNRRYLLPSSFINNALCDDVSIIGVMISSPSFCYLMAYTLNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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