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Report for CCDS28157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28157.1 Public Mus musculus 16 Iqcb1 23 108 98 CCDS HistoryNCBI Gene:320299Re-query CCDS DB by CCDS ID:28157.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023535.3 ENSMUSP00000023535.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023535.3Link to Ensembl Protein Viewer:ENSMUSP00000023535.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023535Re-query CCDS DB by Protein ID:ENSMUSP00000023535
Original member Current member NCBI NM_177128.4 NP_796102.2 Accepted alive Link to Nucleotide Sequence:NM_177128.4Link to Protein Sequence:NP_796102.2Re-query CCDS DB by Nucleotide ID:NM_177128Re-query CCDS DB by Protein ID:NP_796102Link to BLAST:NP_796102.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796102.2 598 Q8BP00-1 598 100% 0 0

Chromosomal Locations for CCDS 28157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36831515 36831614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36831829 36831991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36835516 36835645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36839870 36839963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36843359 36843458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36847481 36847659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36849627 36849736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36851185 36851294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36856291 36856433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36858455 36858603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36867559 36867690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36871451 36871607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36872192 36872421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGAAGCCAGCCGGTACAGACCCAAGGATCTTGTCTTTAGCTGCTGAAGTTGCAAAAAGTCCTGAACAAA
ATGTTCCTGTTATATTATTGAAGTTAAAAGAAATAATAAACAACACCCCTTTGGGAAGCTCAGAGTTAAA
GAAAGTTAAACAAGATATATATTGTTATGACCTCATTCAGTATTGTCTATTGGTCCTCAGTCAAGATTCT
TCTCGAATCCAGGGTGGTTGGTCTACAATTTCCCAGCTTACACAGATACTAAGCCATTGCTGTGTGGGCT
TAGAGCCAGGAGAAGATGGAGAAGAATTTTACAAGGAGTTACTTCCATCAGCTGCTGAAAATTTTCTTAT
CCTGGGGAGAAGGTTACAAACATGTTTCATCAATGCAACTAAGGGTGAAGAGCAAGATAAATTACTACAT
TTTTTCCAAATTGTGACTGATTCTCTCTTCTGGTTATTGGGAGGTCATGTTCAACTGATACAGAATGTAC
TGCAGAGTGATCATTTCTTACACTTGCTGCAAACTGACAATGTTCAGATAGGAGCTTCAGTCATGACTCT
GCTACAGAATATACTACAGATCAACAGTGGTAATTTACTCAAAATAGAAGGAAAAGCCCTGCATTCTATT
TTAGATGAAATTCTTTTCAAGCTTTTGTCAACTCCTAGTCCAGTCATAAGAAGTACTGCTACAAAGCTCC
TGCTAGTACTGGCTGAATCCCATCAGGAAATTTTGATTTTACTGAGACTAAGTGCCTGCTATAAAGGACT
TAGAAGTCTGCTAAATAAACAGGAAACTCTTACAGAATTTAGTCGAGAACTTAGACAGCTCGTTGATCTT
TTAACCCCTAAGATCCATCAGGAAGTAGAAGAACAGAAACTACATAAAGCAGCTTGCTTGATTCAAGCCT
ATTGGAAAGGTTTCCAGACCAGAAAGAGATTAAAGAAGCTTCCGTCTGCTGTGATTGCCTTGCAGAGGAG
TTTCAGATCTAAACGAACAAAGATGATGTTGGAGCTAAATAGGCAGAAGGAAGAAGAAGACCTCAGATTA
AAATTGCAACTTCAAAGACAGAGAGCAATGAGGCTTTCACGAGAGTCACGCTTGAACATGCTTGAAATAA
TTCATCCAGGTCAAGTGGAGAAGTACAATAGGGAAATGGAAGAGAAATCAGCATTGACTATTCAGAAACA
TTGGAGGGGGTACAGGGAAAGGAAGAATTTTCGCCAACAGAGGCCATCTCTCACAGAGTATAAAGCAGCT
GTCACACTTCAAAGAGCAGTTCTTAAATTCCTAGCAAAGTGCCGTAAGAAAAAGAAACTCTTTGCCTCTT
GGCATGGACTTCAAGAACTCACTGATGCACGCAGAGTTGAACTGAAGCAACAAGTGGACGATTATGTCAA
AAGACACCCGTGCTCTCAGATGTCAGAGGCGGCCAGCAGAGAGCTCCATGCACAAGCACAAGAACGACTT
CAGCACTATTTTATGGGAAGAGCCATAGAAGAGCGAGCCCAGCAACACAGAGAAGCTTTGATGGCTCAGA
TCAGCACCAATATTGAACAGCTGATGAAGGCACCAAGTCTGAAGGAGGCAGAAGGAAAGGAACCCGAGCA
ATTCCTAAGTAGATCTAGGCCTGTGGCAGCCAAGGCCAAGCAGGCCCATCTTACCACCCTGAAGCACATA
CAAGCACCCTGGTGGAAGAAGCTTGGAGAAGAACCAGGGGATGAGGTTGATGTTCCAAAGGATGAGCTTA
GTATAGATTTAGGAATGTTATTTATCGGTGGAACCAAACCTCCCTAG

Translation (598 aa):
MKPAGTDPRILSLAAEVAKSPEQNVPVILLKLKEIINNTPLGSSELKKVKQDIYCYDLIQYCLLVLSQDS
SRIQGGWSTISQLTQILSHCCVGLEPGEDGEEFYKELLPSAAENFLILGRRLQTCFINATKGEEQDKLLH
FFQIVTDSLFWLLGGHVQLIQNVLQSDHFLHLLQTDNVQIGASVMTLLQNILQINSGNLLKIEGKALHSI
LDEILFKLLSTPSPVIRSTATKLLLVLAESHQEILILLRLSACYKGLRSLLNKQETLTEFSRELRQLVDL
LTPKIHQEVEEQKLHKAACLIQAYWKGFQTRKRLKKLPSAVIALQRSFRSKRTKMMLELNRQKEEEDLRL
KLQLQRQRAMRLSRESRLNMLEIIHPGQVEKYNREMEEKSALTIQKHWRGYRERKNFRQQRPSLTEYKAA
VTLQRAVLKFLAKCRKKKKLFASWHGLQELTDARRVELKQQVDDYVKRHPCSQMSEAASRELHAQAQERL
QHYFMGRAIEERAQQHREALMAQISTNIEQLMKAPSLKEAEGKEPEQFLSRSRPVAAKAKQAHLTTLKHI
QAPWWKKLGEEPGDEVDVPKDELSIDLGMLFIGGTKPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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