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Report for CCDS40961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40961.1 Public Mus musculus X Bcorl1 23 108 98 CCDS HistoryNCBI Gene:320376Re-query CCDS DB by CCDS ID:40961.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037596.12 ENSMUSP00000039898.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037596.12Link to Ensembl Protein Viewer:ENSMUSP00000039898.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037596Re-query CCDS DB by Protein ID:ENSMUSP00000039898
Original member Current member EBI ENSMUST00000136348.7 ENSMUSP00000122000.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136348.7Link to Ensembl Protein Viewer:ENSMUSP00000122000.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136348Re-query CCDS DB by Protein ID:ENSMUSP00000122000
Original member Current member NCBI NM_178782.4 NP_848897.3 Accepted alive Link to Nucleotide Sequence:NM_178782.4Link to Protein Sequence:NP_848897.3Re-query CCDS DB by Nucleotide ID:NM_178782Re-query CCDS DB by Protein ID:NP_848897Link to BLAST:NP_848897.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848897.3 1781 A2AQH4 1781 100% 0 0

Chromosomal Locations for CCDS 40961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48361577 48361662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48367419 48367509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48367769 48371032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48375023 48375188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48376997 48377077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48378944 48379330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48383922 48384145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48389076 48389297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48391871 48392037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48393154 48393299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48400561 48400638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48401759 48401909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48405917 48406199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5346 nt):
ATGATCTCTACAGCACCGCTCTACAGCGGCGTGCACAACTGGACCAGTTCTGACCGGATTCGCATGTGTG
GCATCAACGAGGAGAGAAGAGCACCTCTTTCTGATGAGGAGTCCACGACAGGTGGCTGCCAGCACTTTGG
ATCTCAGGAGTTTTGTGTCAGCAGCAGTTTTTCCAAGGTGGAGCTCACGGCAGTTGGAAGTGGCAGCAAT
GCCCGGGGGACAAACCCAGATGGCAATACCACAGAAAAACTTGGGCACAGGTCAGAAGATCAGTCTGATG
ACCCTCAGCCAAAAATGGACTATGTTGGGAATCCAGCAGAGGCTGAGGGCCTCCTGGTGCCACTGAGCAG
CCCGGGAGACGGGCTCAAGCTGCCCACTCCTGACAGCACTGAGGCCAGCCACAGCAGAGCCAACTGCTCC
TGGACTCCCTTAAGCACCCAAATGAGCAAACAGGTTGACTGCTCGCCAGCCGGGGTAAAGGCTTTGGACT
CTCGGCACGGTGTTGGGGAGAAGAACACTTTCATTTTGGCAACTCTGGGAACTGGAGTCCCTGTGGAGGG
TACCCTGCCTCTAGTTACCACTAACTTCAGTCAGCTGCCGGCACCTATCTGCCCTCCTGCCCCTGGATCG
GCCTCTGGGACCCCCTCGGTTCCCGATCCATTCCAAGTTCCCCTTTCTGTCCCAGCTCCAGTGCCCCACT
CAGGACTAGTTCCAGTCCAAGTTGCCACATCGGCTTCAGCTCCTTCCCCTCCCCTAGCCCCAGCAGCGCC
CTCGGTGCCTACTCTCATCTCTGATTCAAACCCTCTCTCTGTGTCAGCCTCTGTCTTGGTGCCAGTACCA
GTGTCTGCTCCCCACTCGGTCCCTGTGCCCTTGTCGGCTCCTGCTCCGACCCCTCTCACAGTCTCTGTGT
CCGCACCTCCCTTGGCTCTGATCCAGGCTCCCGTGCCTCCCTCGGCTCCCACCTTGGTCCTTGCTTCTGT
CCCAACTCCAGTTCTAGCTCCCATGCCAGCATCCACACCTCCAGCAGCTCCTGCCCCCCCATCTGTACCA
ATGCCCACTCCGACCCCTTCCTCTGGCCCACCCTCTACCCCCACCCTTATTCCTGCCTTTGCTCCTACAC
CGGTGCCTGCGCCCACCCCAGCCCCAATCTTTACTCCAGCCCCCACGCCCATGCCGGCTGCCACACCAGC
TGCTATCCCCACCTCGGCGCCCATTCCAGCCTCCTTCAGTTTGAGTCGAGTGTGTTTTCCTGCAGCTCAG
GCACCAGCTATGCAAAAAGTCCCCCTGTCTTTTCAACCAGGGACAGTGCTGACCCCTAACCAGCCTCTGG
TATACATCCCACCTCCGAGTTGTGGCCAGCCCCTCAGTGTGGCTACACTGCCAACCACTCTGGGTGTGTC
TTCCACACTCACACTCCCGGTCCTGCCATCTTACCTGCAGGACAGGTGTCTCCCAGGTGTGTTGGCCTCT
CCAGACCTCCGCTCTTATCCATGTGCATTTTCTGTGGCCCGACCTTTGGCTTCAGATTCAAAGTTGGTCT
CTTTAGAGGTGAACAGGCTCTCCTGTACTTCCCCATCCAGCAGCACTAACAGCCAGCCTGCTCCCGATGG
GGTCCCTGGACCTTTGGCAGATACCTCCCTCACCACTGCTTCTGCCAAGGTGCTTCCAACTTCACAGCTT
TTGCTGCCAGCCCCCAGTGGGAGCTCAGTCCCACCACACCCTTCCAAGATGCCAGGTGGCACCGATCAAC
AAACAGAAGGGACTTCTGTCACCTTCTCTCCTCTCAAGTCACCTCCACAGCTGGAGAGAGAGATGGCCTC
TCCACCCGAGTGCAGTGAGATGCCTCTTGACCTCTCTGCCAAGTCCAACCGCCAGAAGCTTCCATTGCCG
AACCAGCGTAAAACACCTCCCATGCCTGTGTTGACCCCTGTGCACACCAGCAGCAAGGCCCTCCTTTCCA
CAGTCCTGTCTAGGTCTCAACGCACAACCCAGGCTGCCGGCAGCAACGTTACTTCCTGCCTAGGCTCCAC
CTCTTCACCTTTTGTTATCTTTCCTGAGATGGTGAGGAATGGAGACCCAAGCACTTGGGTAAAAAACTCA
ACTGCTCTGATCAGCACCATTCCTGGCACATATGTGGGAGTGGCCAACCCAGTGCCTGCATCCCTGCTGT
TGAACAAGGACCCTAACCTGGGCCTTAACCGAGATCCTCGTCATCTCCCCAAGCAGGAGCCCATCTCCAT
CATTGATCAAGGAGAGCCTAAGAGCACTAGTGCCACTTGTGGCAAGAAAGGCAGCCAGGCGGGTGCTGAA
GGACAGCCAAGCACAGTGAAATCCCGTTATACCCCAGCCCGCATTGCCCCTGGGCTGCCAGGGTGCCAAA
CCAAGGAACTGTCTTTATGGAAGCCTACAGGCCTGACAAATATGTACCCACGGTGTTCCATCAATGGAAA
GCCCACTAGCACCCAGGTTCTACCTGTTGGCTGGTCACCATACCACCAAGCATCTCTGCTTTCTATTGGC
ATTTCTAGTGCCGGGCAACTAACCCCCAGTCAGGGGGTGCCTATCAGGCCCACCAGCATTGTTTCTGAGT
TTTCTGGTGTGTCACCTCTTGGTTCCAGTGAAACTGTTCATGGACTTCCTGAGGGGCAGCCACGGCCTGG
GGGCCCTTTTGCTCCAGAGCAGGATGCTGTCACAAAGAACAAAAATTGCCGAATTGCAGCCAAGCCTTAT
GAAGAACAAGTTAATCCTGTCCTCTTGACTCTCAGCCCTCAGTCAGGGACCCTGGCACTGTCTGTTCAGC
CTAGCAGTGGGGACATGGGAGTAAATCAGGGATCCGAGGAATCTGAGAGCCACCTCTGCTCTGACAGTAC
CCCTAAGATGGAAGGCCCCCAGGCAGCCTGTGGCCTGAAGCTGGCAGGAGACACAAAGCCTAAAAACCAA
GTGCTGGCTACCTATATGTCCCACGAGCTGGTCCTGGCCAACCCACAGAACTTGTGCAAGATGCCTGAGC
TGCCTTTGCTACCTCATGACAGCCACTCTAAGGAACTCATTTTAGACGTGGTCCCCAGCAGCGAGAGGGG
CCCCAGCACAGACCTTTCTCAGCTTGGAAGTCAGGTGGATCTGGGGCGGGTGAAAATGGAGAAAGCCGAT
GGCGATGTGGTCTTCAATTTAGCCAACTGCTTCCGAGCTGATGGTCTCCCAGCAGTTCCTCAGAGAGGCC
AGGCTGAAGCTCGGGCTAACGCTGGGCAAGCTCGAGTGAAACGGGAAAGCATTGGGGTCTTTACTTGCAA
GAACAGTTGGCAGCCAGACGAGGAGACAGAATCTCTGCCACCCAAGAAGGTCAAGTGTAACAAAGAAAAG
GAAATTGAGGAAGAACCACGGCAGCAGCCACCACCACAGCCACACGATAAGCCCATGGTCCGGAGTTCCT
TGGGGTCCAAGTGCCGGAAGCTGCCTGGAGACCCCCAGGAACCCACCAAGAAAAGCCCCAGAGGGGCTTT
AGATTCAGGAAAAGAGCACAATGGAGTCAGGGGAAAGCACAAGCACCGGAAGCCAACAAAGCCCGAGTCC
CAGCCTCCAGGAAAACGAACAGATGGTCATGAGGAAGGTTCCTTGGAAAAGAAAGCAAAGAACAGTTTCC
GTGACTTCATCCCTGTGGTTCTGAGCACTCGGACACGCAGTCAGTCTGGTAGCATCTGTAGCTCTTTTGC
TGGTATGGCAGACAGTGACATGGGAAGCCAGGAGGTTTTCCCTACAGAGGAAGAGGAGGAGGTCGCTCCC
ACCCCAGCAAAGAGGAGAAAAGTCAGAAAGACCCAAAGGGATACCCAGTACCGCAGCCATCATGCCCAGG
ACAAAACCCTGCTGAGCCAAGGCCGCAGGCATCTGTGGCGAGCCCGAGAGATGCCCTGGAGGACAGAGGC
TGCCCGGCAAATGTGGGACACCAATGAAGAGGAGGAAGATGATGAGGAAGAGGGCCTCGTGAAGAGAAAG
AAACGGAGACGGCAGAAGAGCCGAAAATACCAGACCGGGGAGTACCTGATTGAACAAGAAGAGCAGAGGC
GGAAAGGGAGAGCAGATTCAAAGGCCCGTAAGCAGAAGACTTCCTCCCAAAGTTCAGAGCACTGCCTCAG
GAACAGGAACCTTCTCTTGTCCAGCAAAGCCCAGGGGATCTCGGACTCACCAAACGGTTTCCTTCCAGAT
AACCTGGAGGAGCCAGCCTGCCTTGAAAACCCAGAAAAGCCGTCAGGAAAGCGAAAGTGCAAGACCAAGC
ACATGGCAAACGCCTCAGAAGAGGCAAGGAGCAAAGGTCGTTGGAGCCAGCAGAAGACACGATCTTCTAA
ATCTCCCACTCCTGTGAAGCCCACAGAACCATGTACACCCTCGAAGTACCGAAGTGCTGGCCCTGAAGAG
GCCTCAGAGTCACCCACTGCCCGACAGATTCCCCCAGAGGCACGGAGACTTATAGTGAATAAAAATGCCG
GGGAGACCCTGCTGCAGAGAGCAGCTCGCCTGGGTTATAAGGACGTAGTTCTCTACTGCCTCCAAAAGCA
CAGCGAGGATGTGAATCACCGTGACAACGCGGGCTACACAGCCTTGCACGAAGCCTGTTCCCGGGGCTGG
ACTGATATCCTGAACATCCTCTTGCAACATGGGGCTAATGTGAACTGCAGCTCGCAGGATGGCACAAGGC
CAGTTCATGATGCTGTGGTCAATGACAACCTAGAAACCATCTGGCTCTTGCTATCCTACGGAGCTGATCC
CACACTGGCTACCTACTCGGGTCAGACAGCCATGAAGCTGGCCAGCAGTGATAACATGAAGCGCTTTCTC
AGTGATCACCTCTCGGATCTTCAGGGCAGGGCAGAGGGCGATCCCCGTGCGTCCTGGGATTTCTACAGCA
GTTCTGTGTTGGAGAAAAAAGACGGGTTTGCCTGTGACCTCCTCCATAATCCTCCTGGGAGTGCCGAGCA
AGGAGATGATTCAGAACAGGATGACTTCATGTTCGAACTCTCAGACAAGCCTCTCCTCCCTTGTTACAAC
CTCCAAGTGTCAGTGTCCCGTGGACCCTGCAACTGGTTCCTCTTCAGCGATGTCCTGAAGAGGCTGAAGC
TCTCCTCAAGAATCTTTCAGGCCCGCTTCCCACACCTTGAAATCACCACCCTGCCCAAGGCTGAGTTCTA
CCGGCAGGTGGCCTCCAGTCAGCTGCTGAGCCCTGCTGAGAGGCCTGGGAGCTTGGAGGACAGATCTCCC
CCAGGGTCTTCTGAGACTGTGGAGCTGGTGCAGTATGAGCCAGAGCTGCTGCGGCTCCTAGGGTCTGAGG
TGGAATACCAGTCTTGGAGCAGTTGA

Translation (1781 aa):
MISTAPLYSGVHNWTSSDRIRMCGINEERRAPLSDEESTTGGCQHFGSQEFCVSSSFSKVELTAVGSGSN
ARGTNPDGNTTEKLGHRSEDQSDDPQPKMDYVGNPAEAEGLLVPLSSPGDGLKLPTPDSTEASHSRANCS
WTPLSTQMSKQVDCSPAGVKALDSRHGVGEKNTFILATLGTGVPVEGTLPLVTTNFSQLPAPICPPAPGS
ASGTPSVPDPFQVPLSVPAPVPHSGLVPVQVATSASAPSPPLAPAAPSVPTLISDSNPLSVSASVLVPVP
VSAPHSVPVPLSAPAPTPLTVSVSAPPLALIQAPVPPSAPTLVLASVPTPVLAPMPASTPPAAPAPPSVP
MPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRVCFPAAQ
APAMQKVPLSFQPGTVLTPNQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLAS
PDLRSYPCAFSVARPLASDSKLVSLEVNRLSCTSPSSSTNSQPAPDGVPGPLADTSLTTASAKVLPTSQL
LLPAPSGSSVPPHPSKMPGGTDQQTEGTSVTFSPLKSPPQLEREMASPPECSEMPLDLSAKSNRQKLPLP
NQRKTPPMPVLTPVHTSSKALLSTVLSRSQRTTQAAGSNVTSCLGSTSSPFVIFPEMVRNGDPSTWVKNS
TALISTIPGTYVGVANPVPASLLLNKDPNLGLNRDPRHLPKQEPISIIDQGEPKSTSATCGKKGSQAGAE
GQPSTVKSRYTPARIAPGLPGCQTKELSLWKPTGLTNMYPRCSINGKPTSTQVLPVGWSPYHQASLLSIG
ISSAGQLTPSQGVPIRPTSIVSEFSGVSPLGSSETVHGLPEGQPRPGGPFAPEQDAVTKNKNCRIAAKPY
EEQVNPVLLTLSPQSGTLALSVQPSSGDMGVNQGSEESESHLCSDSTPKMEGPQAACGLKLAGDTKPKNQ
VLATYMSHELVLANPQNLCKMPELPLLPHDSHSKELILDVVPSSERGPSTDLSQLGSQVDLGRVKMEKAD
GDVVFNLANCFRADGLPAVPQRGQAEARANAGQARVKRESIGVFTCKNSWQPDEETESLPPKKVKCNKEK
EIEEEPRQQPPPQPHDKPMVRSSLGSKCRKLPGDPQEPTKKSPRGALDSGKEHNGVRGKHKHRKPTKPES
QPPGKRTDGHEEGSLEKKAKNSFRDFIPVVLSTRTRSQSGSICSSFAGMADSDMGSQEVFPTEEEEEVAP
TPAKRRKVRKTQRDTQYRSHHAQDKTLLSQGRRHLWRAREMPWRTEAARQMWDTNEEEEDDEEEGLVKRK
KRRRQKSRKYQTGEYLIEQEEQRRKGRADSKARKQKTSSQSSEHCLRNRNLLLSSKAQGISDSPNGFLPD
NLEEPACLENPEKPSGKRKCKTKHMANASEEARSKGRWSQQKTRSSKSPTPVKPTEPCTPSKYRSAGPEE
ASESPTARQIPPEARRLIVNKNAGETLLQRAARLGYKDVVLYCLQKHSEDVNHRDNAGYTALHEACSRGW
TDILNILLQHGANVNCSSQDGTRPVHDAVVNDNLETIWLLLSYGADPTLATYSGQTAMKLASSDNMKRFL
SDHLSDLQGRAEGDPRASWDFYSSSVLEKKDGFACDLLHNPPGSAEQGDDSEQDDFMFELSDKPLLPCYN
LQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHLEITTLPKAEFYRQVASSQLLSPAERPGSLEDRSP
PGSSETVELVQYEPELLRLLGSEVEYQSWSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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