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Report for CCDS24219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24219.1 Public Mus musculus 10 Lrig3 23 108 98 CCDS HistoryNCBI Gene:320398Re-query CCDS DB by CCDS ID:24219.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074807.7 ENSMUSP00000074360.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074807.7Link to Ensembl Protein Viewer:ENSMUSP00000074360.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074807Re-query CCDS DB by Protein ID:ENSMUSP00000074360
Original member Current member NCBI NM_177152.5 NP_796126.4 Accepted alive Link to Nucleotide Sequence:NM_177152.5Link to Protein Sequence:NP_796126.4Re-query CCDS DB by Nucleotide ID:NM_177152Re-query CCDS DB by Protein ID:NP_796126Link to BLAST:NP_796126.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796126.4 1117 Q6P1C6 1117 100% 0 0

Chromosomal Locations for CCDS 24219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 125966476 125966711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125972121 125972192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125972393 125972467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125994418 125994549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125995434 125995577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125996615 125996758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125997062 125997205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125997604 125997747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125998950 125999030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126000089 126000160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126002401 126002472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126002942 126003105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126006688 126007008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126008470 126008751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126009787 126010239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126010901 126011059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126013010 126013153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126013252 126013521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 126014676 126014920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3354 nt):
ATGGGTGCTCCCGGACTCCGAGCGGCCACCGCGGCGCTGGGACTGCTGCTGTGCGCGGGGCTGGGGCGCG
CGGGCCCGGCGGGAAGCGGAGGCCACGGGGCTCCCGGGCAGCTCTTGGACGACGATGCGCAGCGCCCGTG
TCCAGCCGCCTGCCACTGCCTCGGGGACCTGCTGGACTGCAGCCGGCGGCGGCTGGTTCGCCTTCCCGAT
CCTCTCCCGGCCTGGGTCACACGGCTGGACCTGAGTCACAACAGATTATCTTTTATCCAGACGAGTTCCC
TGAGCCACCTTCAAAGCCTTCAAGAAGTGAAGCTGAACAACAATGAATTAGAGACCATTCCAAACCTGGG
ATCCATCTCTGCAAATATTAGACAGCTATCCTTGGCTGGGAACGCCATCGACAAAATCCTCCCTGAACAG
CTGGAAGCCTTTCAGTCCCTTGAGACTTTGGACCTCAGCAACAATAATATTTCAGAACTGAGAACTGCCT
TTCCACCCTTACAACTCAAGTATCTGTATATCAATAACAACCGAGTGTCGTCCATGGAACCAGGGTATTT
TGACAATTTGGCGAGCACGCTCCTGGTGCTGAAGCTGAACAGGAACCGCATCTCAGCCATCCCTCCCAAG
ATGTTTAAACTGCCTCAGCTGCAGCACCTTGAGCTGAACAGAAACAAGATTAAGAACGTGGATGGACTCA
CATTCCAAGGACTTGGTGCACTGAAGTCTCTGAAAATGCAAAGAAACGGAGTGACAAAGCTGATGGATGG
AGCTTTTTGGGGGCTGAGCAACATGGAAGTCCTGCAGCTGGACCATAACAACCTAACCGAGATTACCAAA
GGCTGGCTCTATGGCTTGTTGATGCTGCGGGAACTTCATCTGAGCCAGAACGCCATCAACAGGATCAGCC
CGGATGCCTGGGAGTTCTGCCAGAAACTCAGTGAGCTAGACCTGACTTTCAACCACTTATCAAGGCTAGA
CGATTCCAGCTTCCTGGGCCTAAGCCTACTAAATGCCCTCCACATTGGGAATAACAAAGTCAGCTACATT
GCTGACTGTGCCTTCCGGGGGCTTACCAGTTTAAAGACTTTGGATCTGAGGAACAATGAAATCTCATGGA
CCATCGAAGACATGAGTGGGGCATTCTCTGGGCTGGACAGATTGAGGCAACTAATTCTCCAGGGAAACCG
GATTCGATCTATTACCAAAAAGGCCTTCGCTGGTTTGGACACATTGGAACACCTGGACCTGAGTGGCAAC
GCCATCATGTCTCTACAGAGCAATGCGTTTTCCCAAATGAAGAAACTTCAGCAGCTGCATTTAAATACGT
CGAGCCTTTTGTGTGACTGCCAGCTGAGATGGCTCCCACAGTGGGTGGCGGAGAACAACTTTCAGAGCTT
CGTAAATGCCAGTTGTGCCCACCCTCAGCTGCTGAAAGGGAGGAGCATTTTCACTGTCAGCCCAGATGGC
TTTGTGTGTGATGATTTTCCCAAACCCCAGATCACCGTCCAGCCAGAAACGCAGTCGGCAATAAAGGGCT
CCGACGTGAGTTTTACCTGCTCGGCTGCTAGCAGCAGTGACTCCCCTATGACGTTCGCTTGGAAGAAAGA
CAACGAAGCGCTTCAGGATGCAGAGATGGAGAACTACGCACACCTGCGGGCCCAGGGAGGCGAGCTGATG
GAGTATACCACCATCCTGAGGCTGCGCAATGTGGAATTCACCAGCGAAGGGAAGTACCAGTGTGTCATCT
CCAACCACTTCGGTTCGTCATACTCCGTCAAAGCCAAGCTCACCATCAACATGTTGCCTTCCTTTACCAA
GACCCCCATGGACCTCACCATCCGTGCCGGGGCCATGGCCCGCCTGGAGTGTGCTGCCGTGGGGCACCCA
GCCCCACAGATAGCCTGGCAGAAGGATGGAGGCACGGACTTCCCGGCCGCCCGAGAGAGACGCATGCACG
TGATGCCCGAGGATGACGTCTTCTTCATCGTGGACGTGAAGATCGAGGACATCGGGGTTTACAGCTGCAC
AGCTCAGAACAGTGCAGGGAGCGTCTCTGCAAACGCAACCCTGACTGTGCTAGAGACGCCGTCATTTTTG
CGGCCCCTGTTAGACAGAACCGTCACCAAGGGAGAAACAGCGGTCCTGCAGTGCATTGCTGGAGGGAGCC
CGCCCCCTCGGCTGAACTGGACGAAAGATGACAGCCCTTTGGTGGTGACCGAGAGGCACTTTTTTGCAGC
AGGCAACCAGCTGCTGATCATCGTGGACTCGGACGTCAGCGACGCCGGGAAATACACGTGTGAGATGTCC
AATACCCTTGGCACCGAGAGAGGCAACGTTCGCCTCAGTGTGATCCCTACTCCGACCTGCGACTCCCCTC
ACATGACTGCCCCATCGCTGGACGGCGATGGATGGGCCACCGTGGGCGTGGTGATCATAGCTGTGGTTTG
CTGTGTGGTGGGCACATCCCTCGTGTGGGTGGTCATCATATACCACACAAGGCGGAGGAACGAAGACTGC
AGCATTACCAACACAGATGAGACCAACTTGCCGGCTGACATCCCTAGTTATCTATCATCTCAGGGAACAC
TAGCTGACAGGCAGGACGGGTACATCTCCTCAGAAAGCGGAAGTCACCACCAGTTCGTGACTTCTTCGGG
AGGCGGATTTTTCTTACCACAACACGACGGTGCTGGGACCTGCCATTTTGACGACAGCAGTGAGGCTGAT
GTGGAAGCCGCTTCTGACCCGTTTCTTTGCCCATTCGTGGGCTCCACAGGCCCTGTGTATCTACAGGGGA
ATCTGTACAGCCCAGATCCATTTGAAGTTTATCTTCCAGGTTGCAGCTCTGACCCGAGGACCGCTTTAAT
GGATCACTGTGAGTCCAGCTACGTGAAGCAGGACCGCTTCTCCTGTGCTCGTCCCTCAGAGGAACCCTGT
GAACGGAGCCTCAAGAGCATCCCATGGCCACATTCCAGAAAGCTCACCGACTCCACATATCCTCCGAATG
AGGGACACACAGTTCAGACTCTGTGTCTAAACAAGTCCTCCGTGGATTTCAGTACAGGGCCGGAACCAGG
ATCGGCTACTTCAAGTAACTCATTCATGGGAACCTTCGGAAAACCTCTGAGGAGACCACACCTGGATGCC
TTTTCAAGCTCCGCACAACCGCCAGACTGTCAGCCAAGGCCCTGTCACGGGAAATCGCTTTCCTCGCCAG
AGCTGGACTCTGAATCAGAAGAAAATGACAAAGAAAGGACAGATTTTCGGGAAGAGAATCACAGGTGTAC
TTATCAACAGATATTCCACACTTACAGGACTCCAGATTGCCAGCCTTGTGATTCAGACACATAG

Translation (1117 aa):
MGAPGLRAATAALGLLLCAGLGRAGPAGSGGHGAPGQLLDDDAQRPCPAACHCLGDLLDCSRRRLVRLPD
PLPAWVTRLDLSHNRLSFIQTSSLSHLQSLQEVKLNNNELETIPNLGSISANIRQLSLAGNAIDKILPEQ
LEAFQSLETLDLSNNNISELRTAFPPLQLKYLYINNNRVSSMEPGYFDNLASTLLVLKLNRNRISAIPPK
MFKLPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEVLQLDHNNLTEITK
GWLYGLLMLRELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNALHIGNNKVSYI
ADCAFRGLTSLKTLDLRNNEISWTIEDMSGAFSGLDRLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGN
AIMSLQSNAFSQMKKLQQLHLNTSSLLCDCQLRWLPQWVAENNFQSFVNASCAHPQLLKGRSIFTVSPDG
FVCDDFPKPQITVQPETQSAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELM
EYTTILRLRNVEFTSEGKYQCVISNHFGSSYSVKAKLTINMLPSFTKTPMDLTIRAGAMARLECAAVGHP
APQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSVSANATLTVLETPSFL
RPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAGKYTCEMS
NTLGTERGNVRLSVIPTPTCDSPHMTAPSLDGDGWATVGVVIIAVVCCVVGTSLVWVVIIYHTRRRNEDC
SITNTDETNLPADIPSYLSSQGTLADRQDGYISSESGSHHQFVTSSGGGFFLPQHDGAGTCHFDDSSEAD
VEAASDPFLCPFVGSTGPVYLQGNLYSPDPFEVYLPGCSSDPRTALMDHCESSYVKQDRFSCARPSEEPC
ERSLKSIPWPHSRKLTDSTYPPNEGHTVQTLCLNKSSVDFSTGPEPGSATSSNSFMGTFGKPLRRPHLDA
FSSSAQPPDCQPRPCHGKSLSSPELDSESEENDKERTDFREENHRCTYQQIFHTYRTPDCQPCDSDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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