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Report for CCDS37072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37072.1 Public Mus musculus 15 Samd12 23 108 98 CCDS HistoryNCBI Gene:320679Re-query CCDS DB by CCDS ID:37072.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078673.13 ENSMUSP00000077741.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078673.13Link to Ensembl Protein Viewer:ENSMUSP00000077741.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078673Re-query CCDS DB by Protein ID:ENSMUSP00000077741
Original member Current member NCBI NM_177225.4 NP_796199.1 Accepted alive Link to Nucleotide Sequence:NM_177225.4Link to Protein Sequence:NP_796199.1Re-query CCDS DB by Nucleotide ID:NM_177225Re-query CCDS DB by Protein ID:NP_796199Link to BLAST:NP_796199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796199.1 161 Q0VE29 161 100% 0 0

Chromosomal Locations for CCDS 37072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 53462194 53462216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53658350 53658490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53719615 53719744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53860104 53860282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 53902369 53902381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGCTGTGGAAGCTCTCCACTGTGGTTTGAATCCACGGGGTATTGATCACTCTGCCCATGCTGACGGAA
TTAAACTGCAAATTGAAGGCGAAGGTGTAGAATCTCAATCCATTAAAAACAGAACTTTCCAGAAGGTGCC
TGACCAAAAAGGAACCCCCAAGAGACTTCAGGGAGAAGCTGAGACAGCAAAGTCAGCTACAGTGAAGCTG
TCAAAACCAGTAGCCCTGTGGACCCAGCAGGATGTCTGCAAGTGGCTGAAGAAACACTGTCCAAATCAGT
ATCAGCTCTACAGTGAGTCATTCAAACAACATGACATAACTGGGCGAGCCCTGCTGAGACTCACAGACAA
GAAGCTGGAGCGCATGGGGATTGCCCAGGAGAACCAGCGACAGCACATCCTGCAGCAGGTGCTCCAACTG
AAAGTGCGGGAAGAAGTCAGAAACCTGCAGTTACTCACACAAGCCTCGGTGGAGTGTTCTCCATAA

Translation (161 aa):
MAVEALHCGLNPRGIDHSAHADGIKLQIEGEGVESQSIKNRTFQKVPDQKGTPKRLQGEAETAKSATVKL
SKPVALWTQQDVCKWLKKHCPNQYQLYSESFKQHDITGRALLRLTDKKLERMGIAQENQRQHILQQVLQL
KVREEVRNLQLLTQASVECSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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