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Report for CCDS37047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37047.1 Public Mus musculus 15 Cdh10 23 108 98 CCDS HistoryNCBI Gene:320873Re-query CCDS DB by CCDS ID:37047.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040562.13 ENSMUSP00000042199.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040562.13Link to Ensembl Protein Viewer:ENSMUSP00000042199.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040562Re-query CCDS DB by Protein ID:ENSMUSP00000042199
Original member Current member EBI ENSMUST00000166873.8 ENSMUSP00000128782.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166873.8Link to Ensembl Protein Viewer:ENSMUSP00000128782.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166873Re-query CCDS DB by Protein ID:ENSMUSP00000128782
Original member Current member NCBI NM_001316758.1 NP_001303687.1 Accepted alive Link to Nucleotide Sequence:NM_001316758.1Link to Protein Sequence:NP_001303687.1Re-query CCDS DB by Nucleotide ID:NM_001316758Re-query CCDS DB by Protein ID:NP_001303687Link to BLAST:NP_001303687.1
Original member Current member NCBI NM_009865.3 NP_033995.1 Accepted alive Link to Nucleotide Sequence:NM_009865.3Link to Protein Sequence:NP_033995.1Re-query CCDS DB by Nucleotide ID:NM_009865Re-query CCDS DB by Protein ID:NP_033995Link to BLAST:NP_033995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303687.1 788 P70408 788 100% 0 0
NP_033995.1 788 P70408 788 100% 0 0

Chromosomal Locations for CCDS 37047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 18899589 18899819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18963985 18964279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18965957 18966076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18966742 18966909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18985066 18985253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18986687 18986940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18991913 18992049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 18999864 18999985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 19007552 19007660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 19010857 19011108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 19013192 19013682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGACAATCTATCAGTTCCTGAGACTGTTTGTTCTCTGGGCATGCCTGCCCCACTTCTGCTGTCCAGAAT
TAACGTTCAGAAGGACTCCTGGGATTCAGCAAATGACTGCAGAATCCCGTGCCCCAAGGAGTGATGGTAA
AATCCTTCACCGTCAAAAACGTGGCTGGATGTGGAATCAGTTTTTCTTGCTGGAAGAATATACTGGATCT
GATTATCAATATGTAGGCAAGCTTCATTCAGACCAAGATAAAGGAGATGGATCGCTCAAATATATTTTGT
CTGGAGACGGAGCTGGTACTCTTTTTATTATTGATGAGAAAACAGGTGATATTCATGCCACAAGAAGAAT
TGATAGAGAAGAAAAGGCCTTTTATACTCTACGTGCACAAGCTATTAACAGAAGAACTCTGAGGCCAGTA
GAACCAGAGTCAGAATTTGTGATCAAAATCCATGATATCAATGACAATGAGCCTACATTCCCAGAAGAAA
TTTATACAGCCAGTGTTCCTGAAATGTCTGTTGTAGGTACTTCTGTGGTGCAAGTCACAGCTACAGATGC
CGATGACCCTTCCTATGGAAACAGCGCCAGAGTCATTTACAGCATCCTTCAAGGGCAGCCTTATTTCTCT
GTGGAACCAGAAACAGGTATCATCAGAACAGCTCTGCCAAATATGAACCGAGAGAACAAAGAACAGTACC
AGGTGGTTATTCAAGCCAAGGATATGGGCGGCCAGATGGGGGGTTTGTCTGGAACCACCACAGTGAACAT
CACTCTGACAGATGTCAACGACAATCCACCTCGCTTCCCCCAGAACACCATCCATCTCAGAGTTCTTGAA
TCCTCTCCAGTTGGCACAGCTGTGGGAAGTGTAAAAGCCACTGATGCTGACACGGGGAAAAATGCTGAAG
TGGATTACCGCATTATTGATGGAGATGGCACGGATATGTTTGACATTATAACTGAGAAGGACACACAGGA
AGGCATCATCACTGTGAAAAAGCCACTTGACTATGAGAACCGAAGACTATATACTCTGAAGGTGGAGGCA
GAAAACACCCATGTGGATCCACGTTTTTATTATCTAGGGCCATTCAAAGATACTACAATTGTGAAAATCT
CCATAGAAGACGTGGACGAGCCTCCTGTTTTCAGTCGATCCTCCTATCTGTTTGAGGTTCATGAGGATAT
TGAAGTAGGCACAATCATTGGTACTGTAATGGCAAGAGATCCTGATTCTACATCCAGTCCCATCAGATTT
ACATTGGATCGCCATACTGACCTTGACAGGATCTTTAACATTCATTCTGGAAATGGATCGCTTTATACAT
CAAAGCCACTTGATCGTGAATTATCTCAATGGCACAATCTTACCGTTATAGCTGCTGAGATCAATAATCC
TAAAGAGACAACTCGTGTGTCTGTTTTTGTGAGGATTTTGGATGTTAATGACAACGCTCCACAATTTGCT
GTGTTTTATGACACATTTGTATGTGAAAATGCCAGACCAGGACAGCTGATACAGACCATAAGTGCAGTTG
ACAAAGATGACCCCTTAGGTGGACAGAAGTTTTTCTTCAGTTTGGCTGCTGTGAATCCGAACTTTACAGT
ACAAGATAATGAAGACAACACTGCTAGAATTTTAACAAGAAAGAATGGCTTCAACCGTCATGAAATAAGC
ACCTATCTACTGCCGGTGGTGATATCGGATAACGACTACCCAATTCAGAGCAGCACTGGCACCCTGACGA
TCCGTGTGTGCGCCTGTGACAGCCAAGGCAACATGCAGTCCTGTAGTGCTGAAGCCCTGCTCCTCCCCGC
TGGCCTCAGCACTGGCGCCTTGATCGCCATTCTCCTCTGCATCATTATTCTGCTGGTTATAGTAGTCCTC
TTTGCAGCCCTCAAAAGGCAACGGAAGAAAGAGCCTCTGATTCTATCCAAGGAGGACATCAGAGACAACA
TCGTGAGCTATAACGACGAAGGTGGTGGAGAGGAGGACACCCAGGCCTTTGATATAGGAACCCTGAGGAA
CCCTGCAGCTATCGAGGAGAAAAAGCTCCGGCGAGATATAATTCCTGAAACGTTATTTATACCCCGGAGG
ACTCCTACCGCCCCAGATAACACCGATGTCCGGGATTTCATTAACGAGCGACTCAAAGAGCATGACCTGG
ACCCCACTGCGCCTCCCTACGACTCACTGGCTACCTACGCCTACGAAGGAAACGACTCCGTGGCCGAATC
TCTGAGCTCTTTAGAATCAGGTACCACTGAAGGAGACCAAAACTACGATTACCTCCGAGAATGGGGACCT
CGGTTTAATAAACTAGCAGAAATGTACGGTGGTGGCGAGAGCGACAAAGATGCTTAG

Translation (788 aa):
MTIYQFLRLFVLWACLPHFCCPELTFRRTPGIQQMTAESRAPRSDGKILHRQKRGWMWNQFFLLEEYTGS
DYQYVGKLHSDQDKGDGSLKYILSGDGAGTLFIIDEKTGDIHATRRIDREEKAFYTLRAQAINRRTLRPV
EPESEFVIKIHDINDNEPTFPEEIYTASVPEMSVVGTSVVQVTATDADDPSYGNSARVIYSILQGQPYFS
VEPETGIIRTALPNMNRENKEQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQNTIHLRVLE
SSPVGTAVGSVKATDADTGKNAEVDYRIIDGDGTDMFDIITEKDTQEGIITVKKPLDYENRRLYTLKVEA
ENTHVDPRFYYLGPFKDTTIVKISIEDVDEPPVFSRSSYLFEVHEDIEVGTIIGTVMARDPDSTSSPIRF
TLDRHTDLDRIFNIHSGNGSLYTSKPLDRELSQWHNLTVIAAEINNPKETTRVSVFVRILDVNDNAPQFA
VFYDTFVCENARPGQLIQTISAVDKDDPLGGQKFFFSLAAVNPNFTVQDNEDNTARILTRKNGFNRHEIS
TYLLPVVISDNDYPIQSSTGTLTIRVCACDSQGNMQSCSAEALLLPAGLSTGALIAILLCIIILLVIVVL
FAALKRQRKKEPLILSKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIEEKKLRRDIIPETLFIPRR
TPTAPDNTDVRDFINERLKEHDLDPTAPPYDSLATYAYEGNDSVAESLSSLESGTTEGDQNYDYLREWGP
RFNKLAEMYGGGESDKDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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