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Report for CCDS5412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5412.1 Public Homo sapiens 7 HOXA13 24 110 108 CCDS HistoryNCBI Gene:3209Re-query CCDS DB by CCDS ID:5412.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5412.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000649031.1 ENSP00000497112.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649031.1Link to Ensembl Protein Viewer:ENSP00000497112.1Re-query CCDS DB by Nucleotide ID:ENST00000649031Re-query CCDS DB by Protein ID:ENSP00000497112
Original member Current member NCBI NM_000522.5 NP_000513.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000522.5Link to Protein Sequence:NP_000513.2Re-query CCDS DB by Nucleotide ID:NM_000522Re-query CCDS DB by Protein ID:NP_000513Link to BLAST:NP_000513.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000513.2 388 P31271 388 100% 0 0

Chromosomal Locations for CCDS 5412.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27198198 27198442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27199156 27200077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGACAGCCTCCGTGCTCCTCCACCCCCGCTGGATCGAGCCCACCGTCATGTTTCTCTACGACAACGGCG
GCGGCCTGGTGGCCGACGAGCTCAACAAGAACATGGAAGGGGCGGCGGCGGCTGCAGCAGCGGCTGCAGC
GGCGGCGGCTGCCGGGGCCGGGGGCGGGGGCTTCCCCCACCCGGCGGCTGCGGCGGCAGGGGGCAACTTC
TCGGTGGCGGCGGCGGCCGCGGCTGCGGCGGCGGCCGCGGCCAACCAGTGCCGCAACCTGATGGCGCACC
CGGCGCCCTTGGCGCCAGGAGCCGCGTCCGCCTACAGCAGCGCCCCCGGGGAGGCGCCCCCGTCGGCTGC
CGCCGCTGCTGCCGCGGCTGCCGCTGCAGCCGCCGCCGCCGCCGCCGCGTCGTCCTCGGGAGGTCCCGGC
CCGGCGGGCCCGGCGGGCGCAGAGGCCGCCAAGCAATGCAGCCCCTGCTCGGCAGCGGCGCAGAGCTCGT
CGGGGCCCGCGGCGCTGCCCTATGGCTACTTCGGCAGCGGCTACTACCCGTGCGCCCGCATGGGCCCGCA
CCCCAACGCCATCAAGTCGTGCGCGCAGCCCGCCTCGGCCGCCGCCGCCGCCGCCTTCGCGGACAAGTAC
ATGGATACCGCCGGCCCAGCTGCCGAGGAGTTCAGCTCCCGCGCTAAGGAGTTCGCCTTCTACCACCAGG
GCTACGCAGCCGGGCCTTACCACCACCATCAGCCCATGCCTGGCTACCTGGATATGCCAGTGGTGCCGGG
CCTCGGGGGCCCCGGCGAGTCGCGCCACGAACCCTTGGGTCTTCCCATGGAAAGCTACCAGCCCTGGGCG
CTGCCCAACGGCTGGAACGGCCAAATGTACTGCCCCAAAGAGCAGGCGCAGCCTCCCCACCTCTGGAAGT
CCACTCTGCCCGACGTGGTCTCCCATCCCTCGGATGCCAGCTCCTATAGGAGGGGGAGAAAGAAGCGCGT
GCCTTATACCAAGGTGCAATTAAAAGAACTTGAACGGGAATACGCCACGAATAAATTCATTACTAAGGAC
AAACGGAGGCGGATATCAGCCACGACGAATCTCTCTGAGCGGCAGGTCACAATCTGGTTCCAGAACAGGA
GGGTTAAAGAGAAAAAAGTCATCAACAAACTGAAAACCACTAGTTAA

Translation (388 aa):
MTASVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNF
SVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPG
PAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAAFADKY
MDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWA
LPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKD
KRRRISATTNLSERQVTIWFQNRRVKEKKVINKLKTTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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