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Report for CCDS11532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11532.1 Public Homo sapiens 17 HOXB7 24 110 108 CCDS HistoryNCBI Gene:3217Re-query CCDS DB by CCDS ID:11532.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11532.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239165.9 ENSP00000239165.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239165.9Link to Ensembl Protein Viewer:ENSP00000239165.7Re-query CCDS DB by Nucleotide ID:ENST00000239165Re-query CCDS DB by Protein ID:ENSP00000239165
Original member Current member NCBI NM_004502.4 NP_004493.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004502.4Link to Protein Sequence:NP_004493.3Re-query CCDS DB by Nucleotide ID:NM_004502Re-query CCDS DB by Protein ID:NP_004493Link to BLAST:NP_004493.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004493.3 217 P09629 217 100% 0 0

Chromosomal Locations for CCDS 11532.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48607842 48608095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48610519 48610918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGAGTTCATTGTATTATGCGAATACTTTATTTTCTAAATATCCAGCCTCAAGTTCGGTTTTCGCTACCG
GAGCCTTCCCAGAACAAACTTCTTGTGCGTTTGCTTCCAACCCCCAGCGCCCGGGCTATGGAGCGGGTTC
GGGCGCTTCCTTCGCCGCCTCGATGCAGGGCTTGTACCCCGGCGGGGGGGGCATGGCGGGCCAGAGCGCG
GCCGGCGTCTACGCGGCCGGCTATGGGCTCGAGCCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGC
AGAACCTCTCCGGGGTGTGTCCCGGCGACTCCGCCAAGGCGGCGGGCGCCAAGGAGCAGAGGGACTCGGA
CTTGGCGGCCGAGAGTAACTTCCGGATCTACCCCTGGATGCGAAGCTCAGGAACTGACCGCAAACGAGGC
CGCCAGACCTACACCCGCTACCAGACCCTGGAGCTGGAGAAAGAATTTCACTACAATCGCTACCTGACGC
GGCGGCGGCGCATCGAGATCGCGCACACGCTCTGCCTCACGGAAAGACAGATCAAGATTTGGTTTCAGAA
CCGGCGCATGAAGTGGAAAAAGGAGAACAAGACCGCGGGCCCGGGGACCACCGGCCAAGACAGGGCTGAA
GCAGAGGAGGAAGAGGAAGAGTGA

Translation (217 aa):
MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSA
AGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRG
RQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAE
AEEEEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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