NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25197.1 Public Mus musculus 11 Brip1 23 108 98 CCDS HistoryNCBI Gene:237911Re-query CCDS DB by CCDS ID:25197.1Re-query CCDS DB by GeneID:237911See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044423.3 ENSMUSP00000043108.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044423.3Link to Ensembl Protein Viewer:ENSMUSP00000043108.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044423Re-query CCDS DB by Protein ID:ENSMUSP00000043108
Original member Current member NCBI NM_178309.2 NP_840094.1 Accepted alive Link to Nucleotide Sequence:NM_178309.2Link to Protein Sequence:NP_840094.1Re-query CCDS DB by Nucleotide ID:NM_178309Re-query CCDS DB by Protein ID:NP_840094Link to BLAST:NP_840094.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_840094.1 1174 Q5SXJ3 1174 100% 0 0

Chromosomal Locations for CCDS 25197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86061429 86062045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86064778 86065101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86074279 86074361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86077857 86077969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86108767 86108888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86110343 86110502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86135259 86135420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86138763 86138903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86139014 86139179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86143257 86143411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86146062 86146194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86148358 86148557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86152588 86152809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86157588 86157878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86186965 86187093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86189732 86189859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86192815 86192988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86197869 86197980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86198872 86198964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGTCCTCAGTGTTGTCTGACTACACCATCGGTGGGGTGAAGATCCACTTTCCCTGTAGAGCGTATCCAG
CACAGCTTGCGATGATGAATTCTATTGTCAGAGGACTAAACAGCAGCCAACACTGTTTGCTGGAGAGTCC
CACAGGAAGTGGAAAAAGTTTAGCCTTACTTTGTTCTGCATTAGCATGGCAGCAATCTCTTAGTGAGAAG
CCAGTGGATGAGGGCCTGAATAAAAAGCCTGAGGCACCACCTTCATGTTCTTGTGCATGCCATTCAAAGA
ATTTTACCTACAGCGACACAAACCTGGACACTTCACCTCATTTCAATAGTCCAAGCAAACCATCTTCTGG
AAGAAATGGAGTCTCAACTCCCTGTCAAGACTCTCCTGAAAAAAATACTCTGGCTGCAAAGTTATCTGCC
AAGAAACAGGCATCTATACACAGAGACGAAGATGATGATTTTCAGGTAGAGAAGAAAAGAATCCGACCCT
TAGAAACTACACAGCAGATAAGAAAACGTCATTGTTTGGAAAAGGACGTCCACCATGTAGATGCACGACT
AGCTTCGGAAAAGAGAGTAAAGCCTGAGTCTCCGATAGGAAAGTCTTTCTCCGACAGGAAAGACTCTTTT
CAAAATGTGGATGGCCTTTGTTCCAGGTGCTGCTGTTCTGCTAAACAAGGAAACAACCAAGAGCCTGCAA
ATACTGTTAAGAAAGATCACGGGGGACAATGCAAGAGACCTAAAATTTATTTTGGGACGCGGACACACAA
GCAGATTGCTCAGATTACCAGGGAGCTCCGTAAGACAGCTTACTCAGGGGTCCCGATGACTATTCTTTCC
AGCAGGGACCACAGCTGTGTCCATCCTGAAGTGGTGGGGAATTTCAACAGAAAGGAGAAGTGCATGGAGC
TGCTGGATGGCAAGCACGGGAAGTCCTGCTATTTCTATCATGGTGTTCATAAAATTAGTAATCAGCAGAC
ACTGCAGCACCTTCAGGGCATGTCCAGAGCCTGGGACATAGAAGAACTAGTCAGCCTCGGGAGGAAACTG
AAAGCTTGTCCCTACTATACAGCTCGAGAACTGATAGAGGATGCTGACATAGTGTTTTGTCCCTACAACT
ACCTTTTAGACTCACAAATAAGGGAAACTATGGATATAAAGCTGAAAGGACAAGTTGTCATTTTAGATGA
AGCTCACAACATTGAAGACTGTGCTCGGGAATCAGCAAGCTACAGTGTAACCGAAGTTCAGCTTAGGTTT
GCTCGGGATGAGCTAGATAGTTTGATCAACGGTAACATAAGGAAGAAAAGCCACGAGCCCCTACGAGATG
TGTGCTATAACCTCATCAATTGGTTAGAAACAAATTCTAAGCATCTTGTAGAAAGGGGTTATGAGTCGTC
TTGTAAAATATGGAGTGGAAATGAGATGCTCTTAAACTTATACAGGATGGGCATCACCACGGCTACTTTT
CCAGTTTTGCAGAGGCATCTCTCAGCTGTTCTTCAAAAAGAAGAGAAAGTCACACCAATCCATGGTAAAG
AGGAGGCAATACAAATCCCTATTATCAGTGCATCAACTCAAGTCGTGCTCAAAGGACTCTTTATGGTGCT
TGACTATCTCTTTAGAGAAAATAGCAGATTTGCAGATGATTATAAAGTTGCTATTCAACAGACTTACTCC
TGGACAAATCAGATTGCTATTTTTGATAAAACTGGAGTCTTGGCTGTACCAAAAAATAAGAAACATTCAC
GACAGAAAATTGGAGTTAATGCGCTAAACTTTTGGTGTTTAAATCCAGCTGTGGCCTTTTCAGATATTAA
TGACAAAGTACGGACCATTGTTCTAACATCAGGAACACTCTCACCCCTGAAATCCTTTTCATCTGAGCTT
GGTGTCACATTTAGCATCCAACTGGAGGCTAACCATGTCATCAGTAACTCACAGGTTTGGGTTGGTACTG
TTGGCTCAGGCCCTAAGGGTCGGAATCTCTGCGCTACCTTTCAGCATACTGAAACATTTGAGTTCCAGGA
TGAAGTGGGAATGCTTCTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTCTGTGCTTTTTGCCATCT
TACAAGCTATTAGAGAAATTAAGAGAACGTTGGATTTTCACTGGCCTATGGCATAGTTTGGAGTCAGTGA
AGACAGTCATTGCAGAACCCCAAGGAGGAGAAAAAACTGATTTTGATGAATTGCTGCAAGTGTACTATGA
CGCCATCAAGTTCAAAGGAGAAAAGGATGGAGCCCTTCTCATAGCAGTCTGTCGTGGCAAGGTGAGCGAG
GGTCTGGATTTCTCAGATGATAACGCCCGTGCTGTCATAACCGTAGGGATTCCTTTCCCAAATGTGAAGG
ATCTTCAGGTGGAGCTAAAACGACAATACAATGACCACCACTCAAAATCGAGAGGTCTTCTGCCTGGCCG
TCAGTGGTATGAAATTCAAGCATACCGAGCCTTGAATCAGGCTCTAGGCAGATGTATTCGGCACAAAAAT
GATTGGGGAGCTCTTATTCTAGTGGACGATCGCTTCAATAACAATCCAAACCGCTATATATCAGGACTTT
CTAAATGGGTGAGGCAGCAGATTCAGCACCACTCAAGCTTTGCAAGTGCCCTGGAGTCGCTGACCGAGTT
CTCCAGAAGACACCAGAAAGTTACTAATAGATCCAAAAAAGACGAAAAATGTACAAAAGACAATGAGCCT
ACTCTGGAAGTGGCCTGTTTGGAGGATAGCACTTTTACAAGTGTGTCAGAATCAAGTCATCAGTCACCAG
AAAACTCGACAGAAGAAGCAGAAGTGTGTGTCCAGGAGCTTCAGTGTCCCCAGGTGGCTACTAAAAGCCC
CTCAGTAGCAAGCCACGGTGTTTCCAGAAGGAAGAAAAGTGATCCAGGACTAAGAGGAGAGTCTCTTCAG
ACAATGAAAACAGAAAAAAATGAGATTTCCCGATCTTCAAGCCCAACTTTTGGAAAGCAAACAGAGCCAG
TCAACTGGCCTATCTTTAATTCTCTAAGACGGCATTTCAATAGTAAAGTAAAAAATTGCACACCAGTACT
CAAGTCATCAAAGAACCGTGCCCCTGGTTCTTCCACTTTCAATAAAACTGCTTTGCCACTCACAGGTAAC
TGTGTGCCCTCAAACGAAACAGCAGACACATCACTGGGACCTTGCCTTCAGTCAGAAGTCATAATTTCAC
CAGTGAAGATTGAAGCTACTCCTGCTACGAATTATTCCAAACAGGTGTTCTGCTGTGAGAAAGACCTACT
CCCGGATACTGAATTGTCGCCAGGAACTGAAGAAGCCAAGTGTCCCAGCTCAAACAAAGCTGCTGAAACA
GAAGTGGATGATGACTCTGAGTGTTTTACACCTGAACTTTTTGATCCTGTCGATACCAACGAAGAAAACG
GTGAACTGGTTGAAACTGATAGATCAAGTCATAGTTCAGATTGTTTTTCAGCGGAAGAGCTTTTTGAAAC
TGCAACTGGATTTGGGCAGAAGTGA

Translation (1174 aa):
MSSVLSDYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLSEK
PVDEGLNKKPEAPPSCSCACHSKNFTYSDTNLDTSPHFNSPSKPSSGRNGVSTPCQDSPEKNTLAAKLSA
KKQASIHRDEDDDFQVEKKRIRPLETTQQIRKRHCLEKDVHHVDARLASEKRVKPESPIGKSFSDRKDSF
QNVDGLCSRCCCSAKQGNNQEPANTVKKDHGGQCKRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILS
SRDHSCVHPEVVGNFNRKEKCMELLDGKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKL
KACPYYTARELIEDADIVFCPYNYLLDSQIRETMDIKLKGQVVILDEAHNIEDCARESASYSVTEVQLRF
ARDELDSLINGNIRKKSHEPLRDVCYNLINWLETNSKHLVERGYESSCKIWSGNEMLLNLYRMGITTATF
PVLQRHLSAVLQKEEKVTPIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSRFADDYKVAIQQTYS
WTNQIAIFDKTGVLAVPKNKKHSRQKIGVNALNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSEL
GVTFSIQLEANHVISNSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPS
YKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSE
GLDFSDDNARAVITVGIPFPNVKDLQVELKRQYNDHHSKSRGLLPGRQWYEIQAYRALNQALGRCIRHKN
DWGALILVDDRFNNNPNRYISGLSKWVRQQIQHHSSFASALESLTEFSRRHQKVTNRSKKDEKCTKDNEP
TLEVACLEDSTFTSVSESSHQSPENSTEEAEVCVQELQCPQVATKSPSVASHGVSRRKKSDPGLRGESLQ
TMKTEKNEISRSSSPTFGKQTEPVNWPIFNSLRRHFNSKVKNCTPVLKSSKNRAPGSSTFNKTALPLTGN
CVPSNETADTSLGPCLQSEVIISPVKIEATPATNYSKQVFCCEKDLLPDTELSPGTEEAKCPSSNKAAET
EVDDDSECFTPELFDPVDTNEENGELVETDRSSHSSDCFSAEELFETATGFGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH