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Report for CCDS56228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56228.1 Public Homo sapiens 22 SEC14L2 24 110 108 CCDS HistoryNCBI Gene:23541Re-query CCDS DB by CCDS ID:56228.1Re-query CCDS DB by GeneID:23541See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402592.7 ENSP00000383882.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402592.7Link to Ensembl Protein Viewer:ENSP00000383882.3Re-query CCDS DB by Nucleotide ID:ENST00000402592Re-query CCDS DB by Protein ID:ENSP00000383882
Original member Current member NCBI NM_001204204.3 NP_001191133.1 Accepted alive Link to Nucleotide Sequence:NM_001204204.3Link to Protein Sequence:NP_001191133.1Re-query CCDS DB by Nucleotide ID:NM_001204204Re-query CCDS DB by Protein ID:NP_001191133Link to BLAST:NP_001191133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191133.1 320 O76054-5 320 100% 0 0

Chromosomal Locations for CCDS 56228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30397117 30397170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30399643 30399718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30406342 30406385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30409187 30409282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30409426 30409486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30410596 30410679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30415759 30415865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30415948 30416087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30416234 30416403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30422277 30422407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGAGCGGCAGAGTCGGCGATCTGAGCCCCAGGCAGAAGGAGGCATTGGCCAAGTTTCGGGAGAATGTCC
AGGATGTGCTGCCGGCCCTGCCGAATCCAGATGACTATTTTCTCCTGCGTTGGCTCCGAGCCAGAAGCTT
CGACCTGCAGAAGTCGGAGGCCATGCTCCGGAAGTTGGGGAGGAAGGTGGAGACCATCACCATAATTTAT
GACTGCGAGGGGCTTGGCCTCAAGCATCTCTGGAAGCCTGCTGTGGAGGCCTATGGAGAGTTTCTCTGCA
TGTTTGAGGAAAATTATCCCGAAACACTGAAGCGTCTTTTTGTTGTTAAAGCCCCCAAACTGTTTCCTGT
GGCCTATAACCTCATCAAACCCTTCCTGAGTGAGGACACTCGTAAGAAGATCATGGTCCTGGGAGCAAAT
TGGAAGGAGGTTTTACTGAAACATATCAGCCCTGACCAGGTGCCTGTGGAGTATGGGGGCACCATGACTG
ACCCTGATGGAAACCCCAAGTGCAAATCCAAGATCAACTACGGGGGTGACATCCCCAGGAAGTATTATGT
GCGAGACCAGGTGAAACAGCAGTATGAACACAGCGTGCAGATTTCCCGTGGCTCCTCCCACCAAGTGGAG
TATGAGATCCTCTTCCCTGGCTGTGTCCTCAGGTGGCAGTTTATGTCAGATGGAGCGGATGTTGGTTTTG
GGATTTTCCTGAAGACCAAGATGGGAGAGAGGCAGCGGGCAGGGGAGATGACAGAGGTGCTGCCCAACCA
GAGGTACAACTCCCACCTGGTCCCTGAAGATGGGACCCTCACCTGCAGTGATCCTGGCATCTATGTCCTG
CGGTTTGACAACACCTACAGCTTCATTCATGCCAAGAAGGTCAATTTCACTGTGGAGGTCCTGCTTCCAG
ACAAAGCCTCAGAAGAGAAGATGAAACAGCTGGGGGCAGGCACCCCGAAATAA

Translation (320 aa):
MSGRVGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKLGRKVETITIIY
DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN
WKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVE
YEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVL
RFDNTYSFIHAKKVNFTVEVLLPDKASEEKMKQLGAGTPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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