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Report for CCDS37257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37257.1 Public Mus musculus 16 Mrtfb 23 108 98 CCDS HistoryNCBI Gene:239719Re-query CCDS DB by CCDS ID:37257.1Re-query CCDS DB by GeneID:239719See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056715.6 ENSMUSP00000054993.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056715.6Link to Ensembl Protein Viewer:ENSMUSP00000054993.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056715Re-query CCDS DB by Protein ID:ENSMUSP00000054993
Original member Current member EBI ENSMUST00000115809.7 ENSMUSP00000111476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115809.7Link to Ensembl Protein Viewer:ENSMUSP00000111476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115809Re-query CCDS DB by Protein ID:ENSMUSP00000111476
Original member Current member NCBI NM_181860.1 NP_862908.1 Accepted alive Link to Nucleotide Sequence:NM_181860.1Link to Protein Sequence:NP_862908.1Re-query CCDS DB by Nucleotide ID:NM_181860Re-query CCDS DB by Protein ID:NP_862908Link to BLAST:NP_862908.1

Chromosomal Locations for CCDS 37257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13326418 13326571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13332014 13332076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13332619 13332710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGGATCACACAGGAGCCATAGACACAGAGGAAGAGCTGGGGCCTCTAGCCCATCTTGCACCAAGTCCTC
AAAGTGAGTCTGTGGCTCACGAATTCCAGGAACTGTCTCTACAGTCCAGCCAGCACTTACCCACTCTGAA
CGAACGGAAAAATGGAAGTATAGTCTTTGGGGAGTCAGGACTGCAGCTTCCTCTGCCGGCTCAGTCTGTG
AGCACAGGACATAATAAGAAAAGCAAGAAGCCTCATTTGCCACTAGTCTTGGGTTCCTGCAGGCTGCATT
TAGAACCTGCCAGGTGTTTGGATGGTTGA

Translation (102 aa):
MDHTGAIDTEEELGPLAHLAPSPQSESVAHEFQELSLQSSQHLPTLNERKNGSIVFGESGLQLPLPAQSV
STGHNKKSKKPHLPLVLGSCRLHLEPARCLDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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