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Report for CCDS20663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20663.1 Public Mus musculus 6 Rerg 23 108 98 CCDS HistoryNCBI Gene:232441Re-query CCDS DB by CCDS ID:20663.1Re-query CCDS DB by GeneID:232441See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032347.10 ENSMUSP00000032347.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032347.10Link to Ensembl Protein Viewer:ENSMUSP00000032347.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032347Re-query CCDS DB by Protein ID:ENSMUSP00000032347
Original member Current member EBI ENSMUST00000117919.7 ENSMUSP00000113105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117919.7Link to Ensembl Protein Viewer:ENSMUSP00000113105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117919Re-query CCDS DB by Protein ID:ENSMUSP00000113105
Original member Current member NCBI NM_001164212.1 NP_001157684.1 Accepted alive Link to Nucleotide Sequence:NM_001164212.1Link to Protein Sequence:NP_001157684.1Re-query CCDS DB by Nucleotide ID:NM_001164212Re-query CCDS DB by Protein ID:NP_001157684Link to BLAST:NP_001157684.1
Original member Current member NCBI NM_181988.2 NP_871788.1 Accepted alive Link to Nucleotide Sequence:NM_181988.2Link to Protein Sequence:NP_871788.1Re-query CCDS DB by Nucleotide ID:NM_181988Re-query CCDS DB by Protein ID:NP_871788Link to BLAST:NP_871788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157684.1 199 Q8R367 199 100% 0 0
NP_871788.1 199 Q8R367 199 100% 0 0

Chromosomal Locations for CCDS 20663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 137056133 137056540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137057813 137057886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137066999 137067055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137164935 137164995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCTAAGAGCGCAGAGGTCAAGCTGGCCATATTTGGAAGAGCGGGCGTGGGCAAGTCAGCGATTGTAG
TGAGATTTCTGACCAAACGGTTCATCTGGGAGTACGATCCAACCCTCGAATCAACCTACCGACACCAGGC
AACCATAGACGATGAAGTTGTTTCTATGGAGATCCTGGACACCGCTGGCCAGGAAGACACCATCCAGAGG
GAAGGGCACATGCGCTGGGGAGAAGGCTTCGTGTTGGTTTACGACATCACCGATCGAGGGAGCTTCGAAG
AAGTGCTGCCGCTGAAGAACATCTTAGATGAAGTCAAAAAACCCAAAAACGTGACTCTCATCTTGGTCGG
AAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGACGGAACTG
GCGTGTGCGTTTTACGAATGTTCCGCCTGCACGGGAGAAGGGAACATCACGGAGGTGTTCTATGAGCTCT
GTCGAGAGGTGCGTCGCAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCACCACACACGTCAA
GCAAGCGATTAACAAGATGCTCACCAAAATCAGTAGTTAG

Translation (199 aa):
MAKSAEVKLAIFGRAGVGKSAIVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQR
EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEVKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL
ACAFYECSACTGEGNITEVFYELCREVRRRRMVQGKTRRRSSTTHVKQAINKMLTKISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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