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Report for CCDS50389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50389.1 Public Mus musculus 19 Lrrc10b 23 108 98 CCDS HistoryNCBI Gene:278795Re-query CCDS DB by CCDS ID:50389.1Re-query CCDS DB by GeneID:278795See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171400.3 ENSMUSP00000132865.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171400.3Link to Ensembl Protein Viewer:ENSMUSP00000132865.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171400Re-query CCDS DB by Protein ID:ENSMUSP00000132865
Original member Current member NCBI NM_001111140.2 NP_001104610.1 Accepted alive Link to Nucleotide Sequence:NM_001111140.2Link to Protein Sequence:NP_001104610.1Re-query CCDS DB by Nucleotide ID:NM_001111140Re-query CCDS DB by Protein ID:NP_001104610Link to BLAST:NP_001104610.1

Chromosomal Locations for CCDS 50389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10456437 10457315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGGCATCGCAGAGTCCACGCCGGACGAGCTGCCGTCGGACGCCGAGGAGCAGCTGCGCAGCGGCGAGC
AGCAGCTGGAGCTGAGCGGGCGGCGGTTGCGGCGGCTGCCTAGCGCCGTGTGCGCATTGAGCCGCTTGCA
GAAGCTGTATGTGAGCGGCACCGGGCTGCGCGAGCTTCCCGAGGAGATCGAGGAGCTGCGCGAGCTGCGC
ATCCTGGCGCTCGACTTCAACAAGCTGGAGCGCCTGCCCGACGGCCTGTGTCGCCTACCGCGCCTCACGC
GCCTCTACCTGGGCGGCAACCGTCTGCTGGCGCTGCCACCCGACTTTGCGCAGCTGCAGAGCCTGCGCTG
CCTCTGGATCGAAGGCAACTTCCTGCGGCGCTTTCCGCGGCCGTTGTTGCGCCTGGTGGCGCTGCAATCG
CTGCAGATGGGCGACAACCGGCTGCGCGCGCTGCCCGCCGAGCTGCCGCGCATGACCGGCTTGCGTGGCC
TCTGGCTCTACGGCAATCGCTTCGAAGAGTTCCCGCCCGCGCTGTTGCGCATGGGCCGGCTGCACATCCT
AGACCTCGACCGCAACCGCCTGGGCGGCTTCCCCGACCTGCACCCGCTTCGTGCGCTCCGAGTTTTCTCC
TACGACCACAACCCAGTCACTGGACCCCCGCGGGTGGCAGACACCGTTTTCCTAGTGGGCGAGGGAGCCG
TCGAGCGCATGGCTGAGCGCGACGAACCCATTCCGCGGCAGCCAGCCCGGCGTCCAACCCGGGCCTTTGA
TGATGAGGAGGAAGAAGACCTACTCATAGGAGGCGCAGGACCCAGGGCTCTGGGGCCCACCAGGGACAGC
CTCCGAGCCTTGGAAGCTCCTCCAGGATTGGGCACCTGA

Translation (292 aa):
MGIAESTPDELPSDAEEQLRSGEQQLELSGRRLRRLPSAVCALSRLQKLYVSGTGLRELPEEIEELRELR
ILALDFNKLERLPDGLCRLPRLTRLYLGGNRLLALPPDFAQLQSLRCLWIEGNFLRRFPRPLLRLVALQS
LQMGDNRLRALPAELPRMTGLRGLWLYGNRFEEFPPALLRMGRLHILDLDRNRLGGFPDLHPLRALRVFS
YDHNPVTGPPRVADTVFLVGEGAVERMAERDEPIPRQPARRPTRAFDDEEEEDLLIGGAGPRALGPTRDS
LRALEAPPGLGT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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