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Report for CCDS57383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57383.1 Public Mus musculus 5 Scarb1 23 108 98 CCDS HistoryNCBI Gene:20778Re-query CCDS DB by CCDS ID:57383.1Re-query CCDS DB by GeneID:20778See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111390.7 ENSMUSP00000107021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111390.7Link to Ensembl Protein Viewer:ENSMUSP00000107021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111390Re-query CCDS DB by Protein ID:ENSMUSP00000107021
Original member NCBI NM_001205082.1 NP_001192011.1 Updated not alive Link to Nucleotide Sequence:NM_001205082.1Link to Protein Sequence:NP_001192011.1Re-query CCDS DB by Nucleotide ID:NM_001205082Re-query CCDS DB by Protein ID:NP_001192011
Current member NCBI NM_001205082.2 NP_001192011.1 Accepted alive Link to Nucleotide Sequence:NM_001205082.2Link to Protein Sequence:NP_001192011.1Re-query CCDS DB by Nucleotide ID:NM_001205082Re-query CCDS DB by Protein ID:NP_001192011Link to BLAST:NP_001192011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192011.1 506 Q61009-2 506 100% 0 0

Chromosomal Locations for CCDS 57383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 125277746 125277865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125283899 125284045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125284681 125284732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125287359 125287432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125289637 125289755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125293998 125294164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125297226 125297341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125298633 125298728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125300337 125300540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125303082 125303223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125304195 125304352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125340757 125340882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGGGCGGCAGCTCCAGGGCGCGCTGGGTGGCCTTGGGGTTGGGCGCCCTGGGGCTGCTGTTTGCTGCGC
TCGGCGTTGTCATGATCCTCATGGTGCCCTCCCTCATCAAGCAGCAGGTGCTCAAGAATGTCCGCATAGA
CCCGAGCAGCCTGTCCTTCGGGATGTGGAAGGAGATCCCCGTCCCTTTCTACTTGTCTGTCTACTTCTTC
GAAGTGGTCAACCCAAACGAGGTCCTCAACGGCCAGAAGCCAGTAGTCCGGGAGCGTGGACCCTATGTCT
ACAGGGAGTTCAGACAAAAGGTCAACATCACCTTCAATGACAACGACACCGTGTCCTTCGTGGAGAACCG
CAGCCTCCATTTCCAGCCTGACAAGTCGCATGGCTCAGAGAGTGACTACATTGTACTGCCTAACATCTTG
GTCCTGGGGGGCTCGATATTGATGGAGAGCAAGCCTGTGAGCCTGAAGCTGATGATGACCTTGGCGCTGG
TCACCATGGGCCAGCGTGCTTTTATGAACCGCACAGTTGGTGAGATCCTGTGGGGCTATGACGATCCCTT
CGTGCATTTTCTCAACACGTACCTCCCAGACATGCTTCCCATAAAGGGCAAATTTGGCCTGTTTGTTGGG
ATGAACAACTCGAATTCTGGGGTCTTCACTGTCTTCACGGGCGTCCAGAATTTCAGCAGGATCCATCTGG
TGGACAAATGGAACGGACTCAGCAAGATCGATTATTGGCATTCAGAGCAGTGTAACATGATCAATGGGAC
TTCCGGGCAGATGTGGGCACCCTTCATGACACCCGAATCCTCGCTGGAATTCTTCAGCCCGGAGGCATGC
AGGTCCATGAAGCTGACCTACAACGAATCAAGGGTGTTTGAAGGCATTCCCACGTATCGCTTCACGGCCC
CCGATACTCTGTTTGCCAACGGGTCCGTCTACCCACCCAACGAAGGCTTCTGCCCATGCCGAGAGTCTGG
CATTCAGAATGTCAGCACCTGCAGGTTTGGTGCGCCTCTGTTTCTCTCCCACCCCCACTTTTACAACGCC
GACCCTGTGTTGTCAGAAGCTGTTCTTGGTCTGAACCCTAACCCAAAGGAGCATTCCTTGTTCCTAGACA
TCCATCCGGTCACTGGGATCCCCATGAACTGTTCTGTGAAGATGCAGCTGAGCCTCTACATCAAATCTGT
CAAGGGCATCGGGCAAACAGGGAAGATCGAGCCAGTAGTTCTGCCGTTGCTGTGGTTCGAACAGAGCGGA
GCAATGGGTGGCAAGCCCCTGAGCACGTTCTACACGCAGCTGGTGCTGATGCCCCAGGTTCTTCACTACG
CGCAGTATGTGCTGCTGGGGCTTGGAGGCCTCCTGTTGCTGGTGCCCATCATCTGCCAACTGCGCAGCCA
GGGTCCTGAAGACACTATAAGCCCCCCAAACCTGATAGCTTGGTCAGACCAGCCACCCAGTCCCTACACC
CCGCTTCTTGAGGACTCTCTCAGCGGACAGCCCACCAGTGCCATGGCCTGA

Translation (506 aa):
MGGSSRARWVALGLGALGLLFAALGVVMILMVPSLIKQQVLKNVRIDPSSLSFGMWKEIPVPFYLSVYFF
EVVNPNEVLNGQKPVVRERGPYVYREFRQKVNITFNDNDTVSFVENRSLHFQPDKSHGSESDYIVLPNIL
VLGGSILMESKPVSLKLMMTLALVTMGQRAFMNRTVGEILWGYDDPFVHFLNTYLPDMLPIKGKFGLFVG
MNNSNSGVFTVFTGVQNFSRIHLVDKWNGLSKIDYWHSEQCNMINGTSGQMWAPFMTPESSLEFFSPEAC
RSMKLTYNESRVFEGIPTYRFTAPDTLFANGSVYPPNEGFCPCRESGIQNVSTCRFGAPLFLSHPHFYNA
DPVLSEAVLGLNPNPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGIGQTGKIEPVVLPLLWFEQSG
AMGGKPLSTFYTQLVLMPQVLHYAQYVLLGLGGLLLLVPIICQLRSQGPEDTISPPNLIAWSDQPPSPYT
PLLEDSLSGQPTSAMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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