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Report for CCDS15728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15728.1 Public Mus musculus 2 Yme1l1 23 108 98 CCDS HistoryNCBI Gene:27377Re-query CCDS DB by CCDS ID:15728.1Re-query CCDS DB by GeneID:27377See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028117.3 ENSMUSP00000028117.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028117.3Link to Ensembl Protein Viewer:ENSMUSP00000028117.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028117Re-query CCDS DB by Protein ID:ENSMUSP00000028117
Original member Current member NCBI NM_013771.5 NP_038799.1 Accepted alive Link to Nucleotide Sequence:NM_013771.5Link to Protein Sequence:NP_038799.1Re-query CCDS DB by Nucleotide ID:NM_013771Re-query CCDS DB by Protein ID:NP_038799Link to BLAST:NP_038799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038799.1 715 O88967 715 100% 0 0

Chromosomal Locations for CCDS 15728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23156699 23156731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23160192 23160323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23162501 23162663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23164499 23164597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23168285 23168394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23172956 23173106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23175169 23175252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23181026 23181108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23183213 23183303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23186178 23186330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23186866 23186998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23187780 23187842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23191013 23191125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23192407 23192562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23193088 23193239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23194517 23194643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23194735 23194808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23195322 23195408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23196888 23197031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGTTCTCCCTGTCGAGCACTGTGCAGCCTCAGGTTACAATTCCTCTCAGTCATCTCATCAATGCTTTCC
ATTCACCAAAAAATATATCTGTTTCTGTCAATACACCTGTTTCTCAAAAACAGCATCGAGATACAGTTCC
TGAGCATGAAGCTCCCAGTAGTGAGCCTGTGCTTAATTTAAGGGACCTTGGATTATCTGAATTGAAAATT
GGACAGATTGATAAAATGGTAGAAAATTTACTTCCTGGATTTTATAAAGACAAAAGAGTTTCTTCCTGTT
GGCATACATCTCATATTTCGGCACAGTCCTTTTTTGAAAATAAATATGGTCACTTAGATATGTTCAGTAC
ATTACGTTCCTCTAGCTTGTACAGGCAACATCCAAAAACTCTTCGAAGCATTTGTTCAGATCTTCAGTAT
TTTCCAGTTTTCATACAGTCTCGGGGTTTCAAAACGTTGAAATCAAGGACACGACGTTTGCAGTCTACCT
CTGAAAGATTAGTAGAAGCACAGAATATAGCACCATCATTTGTGAAGGGGTTTCTTTTGCGGGACAGAGG
AACAGATCTTGAGAGTTTGGACAAACTTATGAAAACTAAAAACATACCTGAAGCTCACCAAGATGCATTT
AAAACTGGTTTTGCAGAGGGTTTTCTCAAAGCTCAAGCTCTTACACAGAAGACCAATGATTCCTTAAGGC
GAACTCGTCTGATCCTCTTTGTTTTGCTCCTGTTTGGCATTTATGGACTCTTAAAAAATCCGTTTTTATC
TGTGCGCTTTCGGACAACTACAGGACTTGATTCTGCGGTAGACCCTGTCCAGATGAAAAATGTCACTTTT
GAACATGTTAAAGGGGTGGAGGAAGCCAAACAAGAGTTACAGGAAGTGGTTGAATTCTTGAAAAATCCAC
AGAAGTTTACTGTGCTTGGAGGTAAACTTCCCAAAGGAATTCTTTTAGTTGGGCCACCAGGAACAGGGAA
GACGCTTCTTGCCCGAGCTGTGGCAGGAGAAGCTGACGTCCCTTTTTATTATGCTTCTGGATCAGAGTTT
GATGAGATGTTTGTGGGCGTAGGAGCCAGCAGGATCAGAAATCTTTTTAGAGAAGCAAAAGCAAATGCTC
CTTGTGTTATATTCATCGATGAATTAGATTCTGTTGGTGGAAAGAGAATTGAATCTCCAATGCACCCGTA
TTCAAGGCAGACGATCAATCAGCTTCTTGCTGAAATGGATGGTTTCAAACCCAATGAAGGAGTAATCATT
ATAGGTGCCACAAATTTCCCAGAGGCATTAGATAATGCCTTAATACGTCCTGGTCGTTTTGATATGCAAG
TTACAGTTCCAAGGCCAGATGTGAAGGGTCGAACTGAAATTTTGAAATGGTATCTCAACAAGATAAAGTT
TGATAAATCTGTTGATCCAGAAATCATAGCTCGAGGGACTGTTGGGTTCTCTGGAGCAGAGTTGGAGAAT
CTTGTGAACCAAGCTGCACTAAAGGCAGCAGTTGATGGAAAAGAAATGGTTACCATGAAGGAACTAGAGT
TTTCCAAGGATAAAATTCTAATGGGACCAGAAAGAAGAAGTGTGGAAATTGATAACAAAAACAAAACTAT
AACAGCCTATCATGAATCTGGTCATGCTATTATTGCATATTACACAAAGGATGCAATGCCAATTAATAAA
GCTACAATCATGCCTCGAGGGCCAACACTTGGGCATGTATCACTGTTGCCTGAGAATGACAGATGGAATG
AAACTCGAGCCCAGCTGCTTGCACAGATGGATGTTAGCATGGGAGGAAGAGTGGCAGAGGAACTCATATT
TGGAACTGATCATATTACAACTGGTGCTTCTAGTGATTTTGATAATGCAACAAAAATTGCTAAGAGGATG
GTTACCAAATTTGGAATGAGTGAAAAGCTTGGAGTTATGACCTACAGTGATACAGGAAAACTAAGTCCTG
AAACTCAATCAGCCATTGAACAAGAAATAAGAATCCTTCTACGGGAGTCATATGAACGAGCAAAACATAT
CTTGAAAACACATGCGAAAGAACATAAGAACCTGGCAGAAGCATTGCTGACCTATGAGACTTTGGATGCC
AAAGAGATTCAAATTGTTCTTGAGGGAAAGAAATTGGAAGTGAGATGA

Translation (715 aa):
MFSLSSTVQPQVTIPLSHLINAFHSPKNISVSVNTPVSQKQHRDTVPEHEAPSSEPVLNLRDLGLSELKI
GQIDKMVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHLDMFSTLRSSSLYRQHPKTLRSICSDLQY
FPVFIQSRGFKTLKSRTRRLQSTSERLVEAQNIAPSFVKGFLLRDRGTDLESLDKLMKTKNIPEAHQDAF
KTGFAEGFLKAQALTQKTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTF
EHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEF
DEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII
IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELEN
LVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINK
ATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRM
VTKFGMSEKLGVMTYSDTGKLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDA
KEIQIVLEGKKLEVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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