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Report for CCDS23230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23230.1 Public Mus musculus 9 Cyp1a1 23 108 98 CCDS HistoryNCBI Gene:13076Re-query CCDS DB by CCDS ID:23230.1Re-query CCDS DB by GeneID:13076See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034865.5 ENSMUSP00000034865.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034865.5Link to Ensembl Protein Viewer:ENSMUSP00000034865.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034865Re-query CCDS DB by Protein ID:ENSMUSP00000034865
Original member Current member EBI ENSMUST00000216433.1 ENSMUSP00000150277.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216433.1Link to Ensembl Protein Viewer:ENSMUSP00000150277.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216433Re-query CCDS DB by Protein ID:ENSMUSP00000150277
Original member Current member NCBI NM_001136059.2 NP_001129531.1 Accepted alive Link to Nucleotide Sequence:NM_001136059.2Link to Protein Sequence:NP_001129531.1Re-query CCDS DB by Nucleotide ID:NM_001136059Re-query CCDS DB by Protein ID:NP_001129531Link to BLAST:NP_001129531.1
Original member Current member NCBI NM_009992.4 NP_034122.1 Accepted alive Link to Nucleotide Sequence:NM_009992.4Link to Protein Sequence:NP_034122.1Re-query CCDS DB by Nucleotide ID:NM_009992Re-query CCDS DB by Protein ID:NP_034122Link to BLAST:NP_034122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129531.1 524 P00184 524 100% 0 0
NP_034122.1 524 P00184 524 100% 0 0

Chromosomal Locations for CCDS 23230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57700091 57700927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57701675 57701801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57701889 57701978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57702072 57702195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57702346 57702432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57702570 57702879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGCCTTCCATGTATGGACTTCCAGCCTTCGTGTCAGCCACAGAGCTGCTCCTGGCTGTCACCGTATTCT
GCCTTGGATTCTGGGTGGTCAGAGCCACAAGAACCTGGGTTCCCAAAGGCCTGAAGACTCCACCAGGGCC
CTGGGGCTTGCCCTTCATTGGTCACATGCTGACTGTGGGGAAGAACCCACATCTGTCACTGACACGGCTG
AGTCAGCAGTATGGGGACGTGCTGCAGATCCGCATCGGCTCCACTCCTGTGGTGGTGCTGAGCGGCCTGA
ACACCATCAAGCAGGCCCTGGTGAGGCAGGGAGATGACTTCAAGGGCCGGCCAGACCTCTACAGCTTCAC
ACTTATCACTAATGGCAAGAGCATGACTTTTAACCCAGACTCTGGACCCGTGTGGGCTGCCCGCCGGCGC
CTGGCCCAGAATGCCCTGAAGAGCTTCTCCATAGCCTCGGACCCGACGTCAGCATCCTCTTGCTACTTGG
AGGAGCACGTGAGCAAGGAGGCTAACTATCTCGTCAGCAAACTTCAGAAGGTGATGGCAGAGGTTGGCCA
CTTTGACCCTTACAAGTATTTGGTCGTGTCAGTAGCCAATGTCATCTGTGCCATATGCTTTGGCCAACGT
TATGACCATGATGACCAAGAGCTGCTCAGCATAGTCAATCTGAGCAATGAGTTTGGGGAGGTTACTGGCT
CTGGATACCCAGCTGACTTCATTCCTGTCCTCCGTTACCTGCCTAACTCTTCCCTGGATGCCTTCAAGGA
CTTGAATGATAAGTTCTACAGCTTCATGAAGAAGTTAATCAAAGAGCACTACAGGACATTTGAGAAGGGC
CACATCCGGGACATCACAGACAGCCTCATTGAGCATTGTCAGGACAGGAAGCTGGACGAGAATGCCAATG
TCCAGCTGTCAGATGATAAGGTCATCACGATTGTTTTGGACCTCTTTGGAGCTGGGTTTGACACAGTCAC
AACTGCTATCTCGTGGAGCCTCATGTACCTGGTAACCAACCCTAGGGTACAGAGAAAGATCCAGGAGGAA
CTAGACACAGTGATTGGCAGAGATCGGCAGCCCCGGCTTTCTGACAGACCTCAGCTGCCCTATCTGGAGG
CCTTCATTCTGGAGACCTTCCGGCATTCATCCTTCGTCCCCTTCACCATCCCCCACAGCACCACAAGAGA
TACAAGTCTGAATGGCTTCTATATCCCCAAGGGGTGCTGTGTCTTTGTGAACCAGTGGCAGGTTAACCAT
GACCGGGAACTGTGGGGTGACCCAAACGAGTTCCGGCCTGAAAGGTTTCTCACCCCCAGCGGCACTCTGG
ACAAGCGCTTGAGTGAGAAGGTCACTCTCTTTGGTTTGGGCAAGCGAAAGTGCATCGGAGAGACCATTGG
CCGATCGGAGGTCTTTCTCTTCCTGGCCATCTTGCTGCAGCAAATAGAATTTAAGGTGTCTCCAGGGGAG
AAGGTGGATATGACTCCTACCTATGGGCTGACTTTAAAACACGCCCGCTGTGAACACTTCCAAGTGCAGA
TGCGGTCTTCTGGTCCTCAGCATCTTCAGGCTTAG

Translation (524 aa):
MPSMYGLPAFVSATELLLAVTVFCLGFWVVRATRTWVPKGLKTPPGPWGLPFIGHMLTVGKNPHLSLTRL
SQQYGDVLQIRIGSTPVVVLSGLNTIKQALVRQGDDFKGRPDLYSFTLITNGKSMTFNPDSGPVWAARRR
LAQNALKSFSIASDPTSASSCYLEEHVSKEANYLVSKLQKVMAEVGHFDPYKYLVVSVANVICAICFGQR
YDHDDQELLSIVNLSNEFGEVTGSGYPADFIPVLRYLPNSSLDAFKDLNDKFYSFMKKLIKEHYRTFEKG
HIRDITDSLIEHCQDRKLDENANVQLSDDKVITIVLDLFGAGFDTVTTAISWSLMYLVTNPRVQRKIQEE
LDTVIGRDRQPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTSLNGFYIPKGCCVFVNQWQVNH
DRELWGDPNEFRPERFLTPSGTLDKRLSEKVTLFGLGKRKCIGETIGRSEVFLFLAILLQQIEFKVSPGE
KVDMTPTYGLTLKHARCEHFQVQMRSSGPQHLQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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