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Report for CCDS26184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26184.1 Public Mus musculus 12 Trmt61a 23 108 98 CCDS HistoryNCBI Gene:328162Re-query CCDS DB by CCDS ID:26184.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084947.9 ENSMUSP00000082011.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084947.9Link to Ensembl Protein Viewer:ENSMUSP00000082011.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084947Re-query CCDS DB by Protein ID:ENSMUSP00000082011
Original member Current member EBI ENSMUST00000168338.1 ENSMUSP00000133128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168338.1Link to Ensembl Protein Viewer:ENSMUSP00000133128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168338Re-query CCDS DB by Protein ID:ENSMUSP00000133128
Original member Current member NCBI NM_001099792.1 NP_001093262.1 Accepted alive Link to Nucleotide Sequence:NM_001099792.1Link to Protein Sequence:NP_001093262.1Re-query CCDS DB by Nucleotide ID:NM_001099792Re-query CCDS DB by Protein ID:NP_001093262Link to BLAST:NP_001093262.1
Original member Current member NCBI NM_001099793.1 NP_001093263.1 Accepted alive Link to Nucleotide Sequence:NM_001099793.1Link to Protein Sequence:NP_001093263.1Re-query CCDS DB by Nucleotide ID:NM_001099793Re-query CCDS DB by Protein ID:NP_001093263Link to BLAST:NP_001093263.1
Original member Current member NCBI NM_177374.4 NP_796348.2 Accepted alive Link to Nucleotide Sequence:NM_177374.4Link to Protein Sequence:NP_796348.2Re-query CCDS DB by Nucleotide ID:NM_177374Re-query CCDS DB by Protein ID:NP_796348Link to BLAST:NP_796348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093262.1 290 Q80XC2 290 100% 0 0
NP_001093263.1 290 Q80XC2 290 100% 0 0
NP_796348.2 290 Q80XC2 290 100% 0 0

Chromosomal Locations for CCDS 26184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111678632 111678962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111680802 111681068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111682595 111682869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGAGTTTCGTGGCATACGAGGAGCTGATCAAGGAAGGCGACACAGCCATCCTGTCACTGGGGCACGGCT
CGATGGTAGCAGTGCGTGTGCAGCGTGGGGCACAGACCCAGACCCGGCATGGCGTCCTGAGGCACTCGGT
GGACCTCATTGGCCGCCCATTTGGCTCCAAGGTGATTTGCAGCAGAGGCGGCTGGGTGTATGTGCTGCAC
CCCACTCCTGAGCTCTGGACAGTGAACCTGCCCCACCGCACGCAGATCCTCTACTCCACCGACATTGCCT
TGATCACCATGATGCTGGAGCTGCGTCCCGGTTCTGTGGTCTGTGAATCAGGCACGGGCAGTGGTTCTGT
ATCCCACGCAATCATCCGCAGCGTTGCCCCCACTGGCCACCTACACACAGTAGAGTTCCACCAGCAACGG
GCGGACAAGGCCCGGGAGGAATTCCAGGAGCATCGGCTGAGCCAGTGGGTGACTGTGCACACCCAGGATG
TGTGCTGCAGTGGCTTCGGTGTGGTCCACGTGGCTGACGCTGTCTTCTTGGATATCCCATCACCCTGGGA
AGCTGTGGGCCATGCCTGGGATGCCCTCAAGGTTGAAGGTGGGCGTTTCTGCTCCTTCTCTCCGTGCATT
GAGCAGGTGCAGCGGACATGCCAGGCGCTGGCAGCCCATGGCTTCACAGAGCTTAGCACCCTGGAGGTAC
TGCCACAGGTCTACAATGTGCGCACTGTCAGTCTGCCCTTGCCCGACCTGGGGGCCAACAACTTAGAGAC
CAACATGGGCTCTGATGCCAGCCCCTTCCGTAGTGGCACACCCATGAAGGAGACTGTGGGCCACACTGGC
TACCTGACTTTTGCCACTAAAACCCCAGGCTAG

Translation (290 aa):
MSFVAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGGWVYVLH
PTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSVAPTGHLHTVEFHQQR
ADKAREEFQEHRLSQWVTVHTQDVCCSGFGVVHVADAVFLDIPSPWEAVGHAWDALKVEGGRFCSFSPCI
EQVQRTCQALAAHGFTELSTLEVLPQVYNVRTVSLPLPDLGANNLETNMGSDASPFRSGTPMKETVGHTG
YLTFATKTPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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